# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2de6A 392 1.78e-19 b.33.1.2,d.129.3.3 131415,131416 1z02A 446 3.02e-19 1uliA 460 4.50e-18 b.33.1.2,d.129.3.3 107921,107922 2gbwA 454 6.64e-18 2ckfA 454 9.05e-18 2e4qA 109 1.33e-17 2bmoA 447 1.36e-17 b.33.1.2,d.129.3.3 128804,128805 2b1xA 470 1.37e-17 b.33.1.2,d.129.3.3 127675,127676 1fqtA 112 1.65e-17 b.33.1.1 24441 1sjgA 112 2.05e-17 b.33.1.1 105647 1vm9A 111 5.91e-17 b.33.1.1 108886 1o7nA 449 7.66e-17 b.33.1.2,d.129.3.3 81162,81163 2de6D 115 1.08e-16 2q3wA 111 1.64e-16 b.33.1.1 139813 1eg9A 449 1.93e-16 b.33.1.2,d.129.3.3 24443,41322 1ndoA 449 2.94e-16 b.33.1.2,d.129.3.3 24444,41323 2i7fA 108 7.81e-16 2jo6A 113 1.36e-15 3c0dA 119 2.12e-15 1rie 129 1.52e-11 1rfsA 139 3.45e-11 b.33.1.1 24434 1nykA 165 6.12e-11 b.33.1.1 86408 1rfs 139 6.46e-11 1rieA 129 1.22e-10 b.33.1.1 24427 1g8kB 133 2.18e-10 b.33.1.1 24435 2nvgA 141 3.94e-10 1bccE 196 4.62e-09 b.33.1.1,f.23.12.1 24431,43699 2nwfA 141 6.61e-09 1g8jB 133 9.91e-09 b.33.1.1 24439 1ppjE 196 1.78e-08 b.33.1.1,f.23.12.1 104260,104261 2e74D 179 5.25e-08 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 1.01e-06 b.33.1.1 71745 1gof 639 2.283 1e8yA 966 2.539 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1pguA 615 2.816 b.69.4.1,b.69.4.1 88069,88070 1a12A 413 4.733 b.69.5.1 27663 2j8gA 339 5.322 1ddzA 496 5.431 c.53.2.1,c.53.2.1 33372,33373 2hesX 330 5.454 1kxgA 152 6.047 b.22.1.1 73145 2oy7A 320 8.524 2ad6A 571 8.710 b.70.1.1 126568 1xyfA 436 8.769 b.42.2.1,c.1.8.3 25577,28909 1nr0A 611 9.578 b.69.4.1,b.69.4.1 86078,86079 2ovrB 445 10.38 1ri6A 343 11.72 b.69.11.1 97503 1jtdB 273 12.09 b.69.5.2 67265 1a0rB 340 12.65 b.69.4.1 27658 1mpyA 307 15.17 d.32.1.3,d.32.1.3 38508,38509 1s4uX 407 15.78 b.69.4.1 112027 2qmjA 870 15.93 2ouxA 286 17.38 1y4wA 518 17.52 b.29.1.19,b.67.2.3 116470,116471 2jg9C 131 18.78 1kqfB 294 19.01 d.58.1.5,f.23.22.1 75900,75901 1h8gA 95 19.21 b.109.1.1 65735 1q7fA 286 19.68 b.68.9.1 96036 1ot1A 686 20.76 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87392,87393,87394,87395 1erjA 393 21.30 b.69.4.1 27660 1qksA 567 21.52 a.3.1.2,b.70.2.1 15951,27710 1yudA 170 23.26 b.82.1.16 124046 2gnpA 266 23.54 1l0qA 391 23.94 b.1.3.1,b.69.2.3 77644,77645 1m9zA 111 24.07 g.7.1.3 78881 1pbyB 337 24.85 b.69.2.2 94422 2hxrA 238 25.22 1ktzB 122 25.68 g.7.1.3 68868 1vprA 374 26.04 b.60.1.7 120066 2j3mA 572 26.58 2o8bA 934 26.96 1w0pA 781 27.04 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1tbgA 340 27.47 b.69.4.1 27649 1lci 550 29.69 1d8wA 426 30.06 c.1.15.2 29394 1cmxA 236 30.78 d.3.1.6 37130 1jpcA 109 31.25 b.78.1.1 27986 1g5cA 170 31.72 c.53.2.1 60264 1rx0A 393 33.15 a.29.3.1,e.6.1.1 98007,98008 2oajA 902 34.04 2nq5A 755 35.47 1y8tA 324 36.26 b.36.1.4,b.47.1.1 122763,122764 3bt3A 148 36.87 2h1tA 188 37.01 2vgpA 284 38.46 2gdnA 267 38.82 1esoA 154 39.21 b.1.8.1 22293 1obpA 159 39.24 b.60.1.1 27092 2d27A 149 40.55 1i6pA 220 42.93 c.53.2.1 61848 1p22A 435 44.27 a.158.1.1,b.69.4.1 87715,87716 1slqA 278 47.88 f.47.1.1 105719 1z9nA 177 47.92 1k3iA 656 48.27 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2bklA 695 48.92 1yaiA 151 49.29 b.1.8.1 22289 1rvkA 382 51.54 c.1.11.2,d.54.1.1 97928,97929 3cngA 189 51.76 2olnA 397 52.37 1wl7A 312 52.46 b.67.2.1 120996 2jz8A 87 52.68 3biqA 467 52.89 1pgsA 314 54.93 b.121.1.1,b.121.1.1 23653,23654 2pbiB 354 56.80 1ii2A 524 56.90 c.91.1.1,c.109.1.1 66146,66147 2nt0A 497 57.65 b.71.1.2,c.1.8.3 138561,138562 2ahdA 165 57.82 d.159.1.7 126752 1qh4A 380 58.27 a.83.1.1,d.128.1.2 18462,41197 2fe8A 315 58.29 2oqeA 660 59.44 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 2heqA 84 59.78 2aaaA 484 60.03 b.71.1.1,c.1.8.1 27777,28764 1sqjA 789 60.18 b.69.13.1,b.69.13.1 105918,105919 3b3qE 197 61.42 2qedA 258 62.29 2evrA 246 62.43 b.34.11.3,d.3.1.16 132440,132441 2p4oA 306 63.24 1zo0A 126 63.68 d.108.1.7 125416 2fafA 608 63.88 1who 96 63.94 1vclA 432 64.33 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1odzA 386 65.37 c.1.8.3 86889 1m2tB 263 65.39 b.42.2.1,b.42.2.1 84762,84763 4mbp 370 65.99 1q67A 231 66.15 b.55.1.7 95960 2nu8B 388 66.60 1dkxA 219 67.21 a.8.4.1,b.130.1.1 90339,90340 2pm7B 297 68.90 1zh1A 163 69.40 1l8bA 190 70.26 d.86.1.1 73683 1ttuA 477 71.47 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 2vduB 450 72.46 2arhA 203 73.43 d.108.1.9 127197 2z1eA 342 76.09 1yymG 313 76.17 d.172.1.1 124232 1bdfA 235 77.02 d.74.3.1,d.181.1.1 39727,42602 1gnwA 211 78.43 a.45.1.1,c.47.1.5 17727,33021 2uvkA 357 78.57 2v7bA 529 79.56 1ejeA 192 80.02 b.45.1.2 25757 1vqoK 132 83.79 b.39.1.1 120372 1yfqA 342 84.59 b.69.4.2 116680 1zv9A 172 84.86 b.2.2.2 125700 2gc7A 386 85.30 b.69.2.1 134954 1gxrA 337 87.81 b.69.4.1 70722 2bshA 125 88.86 1i3kA 348 89.60 c.2.1.2 61595