# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z02A 446 3.70e-17 2de6A 392 6.31e-17 b.33.1.2,d.129.3.3 131415,131416 2ckfA 454 8.40e-16 2gbwA 454 8.60e-16 1uliA 460 2.61e-15 b.33.1.2,d.129.3.3 107921,107922 2bmoA 447 2.92e-15 b.33.1.2,d.129.3.3 128804,128805 1fqtA 112 3.59e-15 b.33.1.1 24441 2e4qA 109 3.86e-15 2b1xA 470 4.26e-15 b.33.1.2,d.129.3.3 127675,127676 1o7nA 449 9.52e-15 b.33.1.2,d.129.3.3 81162,81163 1sjgA 112 1.02e-14 b.33.1.1 105647 1vm9A 111 1.11e-14 b.33.1.1 108886 2de6D 115 1.36e-14 1ndoA 449 2.34e-14 b.33.1.2,d.129.3.3 24444,41323 1eg9A 449 2.50e-14 b.33.1.2,d.129.3.3 24443,41322 2q3wA 111 5.90e-14 b.33.1.1 139813 2i7fA 108 6.92e-14 3c0dA 119 1.71e-13 2jo6A 113 5.32e-13 1rie 129 8.74e-10 1nykA 165 9.36e-10 b.33.1.1 86408 1rfs 139 2.41e-09 2nvgA 141 3.21e-09 1g8kB 133 4.01e-09 b.33.1.1 24435 1rieA 129 4.28e-09 b.33.1.1 24427 1rfsA 139 4.31e-09 b.33.1.1 24434 1bccE 196 5.04e-08 b.33.1.1,f.23.12.1 24431,43699 2nwfA 141 5.32e-08 1g8jB 133 5.44e-08 b.33.1.1 24439 1ppjE 196 1.57e-07 b.33.1.1,f.23.12.1 104260,104261 2e74D 179 3.57e-07 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 1.35e-05 b.33.1.1 71745 2d27A 149 12.21 2hu5A 582 16.18 b.69.7.2,c.69.1.33 136763,136764 1kxgA 152 17.37 b.22.1.1 73145 1g5cA 170 19.72 c.53.2.1 60264 1m9zA 111 20.01 g.7.1.3 78881 2biiA 424 20.57 1ktzB 122 21.76 g.7.1.3 68868 2sfaA 191 21.97 b.47.1.1 25815 1yiqA 689 22.44 2veqA 565 25.59 1i6pA 220 25.85 c.53.2.1 61848 1ddzA 496 27.92 c.53.2.1,c.53.2.1 33372,33373 2jrfA 184 29.64 1zo0A 126 31.24 d.108.1.7 125416 1qksA 567 31.87 a.3.1.2,b.70.2.1 15951,27710 1jpcA 109 32.53 b.78.1.1 27986 1rvkA 382 33.55 c.1.11.2,d.54.1.1 97928,97929 1kevA 351 37.07 b.35.1.2,c.2.1.1 24749,29765 2ad6A 571 37.10 b.70.1.1 126568 1kloA 162 38.41 g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1g72A 573 41.67 b.70.1.1 27680 2pm7B 297 42.83 2d28C 149 43.16 2qmcA 377 43.29 2dg5A 366 49.24 d.153.1.6 131500 2nqoA 376 49.57 d.153.1.6 138473 1ixcA 294 50.98 a.4.5.37,c.94.1.1 83764,83765 2hesX 330 51.37 2qggA 182 57.81 3b2mA 295 58.89 1h91A 180 59.42 b.60.1.1 60805 2jz8A 87 59.72 1el6A 219 60.76 d.182.1.1 42606 1v37A 177 63.55 c.60.1.1 113497 1gaxA 862 63.80 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1ko9A 345 64.02 a.96.1.3,d.129.1.2 68717,68718 2jg9C 131 72.99 1knmA 130 79.63 b.42.2.1 72781 1e44B 96 79.79 b.101.1.1 59220 2qmjA 870 80.83 2v89A 82 81.20 1q67A 231 83.20 b.55.1.7 95960 3bdrA 190 84.96 1ekjA 221 87.21 c.53.2.1 33364 1ylkA 172 87.69 1whiA 122 88.81 b.39.1.1 24810