# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z02A 446 3.18e-19 2de6A 392 6.05e-19 b.33.1.2,d.129.3.3 131415,131416 2gbwA 454 9.59e-18 2ckfA 454 1.13e-17 1uliA 460 4.27e-17 b.33.1.2,d.129.3.3 107921,107922 2bmoA 447 4.40e-17 b.33.1.2,d.129.3.3 128804,128805 2b1xA 470 5.84e-17 b.33.1.2,d.129.3.3 127675,127676 2e4qA 109 9.53e-17 1fqtA 112 1.36e-16 b.33.1.1 24441 1o7nA 449 2.08e-16 b.33.1.2,d.129.3.3 81162,81163 1sjgA 112 2.49e-16 b.33.1.1 105647 1vm9A 111 3.67e-16 b.33.1.1 108886 1ndoA 449 4.23e-16 b.33.1.2,d.129.3.3 24444,41323 2de6D 115 4.37e-16 1eg9A 449 4.86e-16 b.33.1.2,d.129.3.3 24443,41322 2q3wA 111 8.26e-16 b.33.1.1 139813 2i7fA 108 2.72e-15 3c0dA 119 5.61e-15 2jo6A 113 2.61e-14 1nykA 165 6.66e-11 b.33.1.1 86408 1rie 129 9.74e-11 1rfs 139 1.87e-10 1rfsA 139 1.97e-10 b.33.1.1 24434 2nvgA 141 4.69e-10 1g8kB 133 5.14e-10 b.33.1.1 24435 1rieA 129 6.60e-10 b.33.1.1 24427 1bccE 196 6.88e-09 b.33.1.1,f.23.12.1 24431,43699 1g8jB 133 7.19e-09 b.33.1.1 24439 2nwfA 141 1.13e-08 1ppjE 196 3.03e-08 b.33.1.1,f.23.12.1 104260,104261 2e74D 179 6.06e-08 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 2.11e-06 b.33.1.1 71745 2sfaA 191 8.674 b.47.1.1 25815 1kxgA 152 12.10 b.22.1.1 73145 2veqA 565 12.77 1m9zA 111 15.39 g.7.1.3 78881 2jrfA 184 16.28 1ktzB 122 16.44 g.7.1.3 68868 2d27A 149 18.67 1i6pA 220 19.21 c.53.2.1 61848 2hu5A 582 20.98 b.69.7.2,c.69.1.33 136763,136764 2pm7B 297 21.24 2biiA 424 22.84 2v89A 82 25.79 1yiqA 689 27.94 1g5cA 170 29.47 c.53.2.1 60264 1zo0A 126 35.67 d.108.1.7 125416 2nqoA 376 35.82 d.153.1.6 138473 1ddzA 496 36.16 c.53.2.1,c.53.2.1 33372,33373 2dg5A 366 36.43 d.153.1.6 131500 1kevA 351 37.26 b.35.1.2,c.2.1.1 24749,29765 1h91A 180 39.59 b.60.1.1 60805 2ad6A 571 40.03 b.70.1.1 126568 1v37A 177 42.21 c.60.1.1 113497 2hesX 330 44.04 1qksA 567 48.93 a.3.1.2,b.70.2.1 15951,27710 2qmcA 377 53.31 3bdrA 190 53.64 1g72A 573 54.46 b.70.1.1 27680 2jz8A 87 55.61 2d28C 149 55.68 1kloA 162 56.34 g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1q67A 231 57.50 b.55.1.7 95960 1v87A 114 59.94 g.44.1.1 108422 1slqA 278 60.54 f.47.1.1 105719 2jg9C 131 60.89 2oizA 361 64.14 6rlxA 24 66.10 1jpcA 109 68.86 b.78.1.1 27986 1rvkA 382 71.94 c.1.11.2,d.54.1.1 97928,97929 2quqA 562 72.41 2qggA 182 72.49 2qcuA 501 78.01 1peaA 385 80.23 c.93.1.1 35662 1dl6A 58 83.20 g.41.3.1 45207 1l0qA 391 86.44 b.1.3.1,b.69.2.3 77644,77645