# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z02A 446 5.71e-18 2de6A 392 8.03e-18 b.33.1.2,d.129.3.3 131415,131416 2gbwA 454 1.12e-16 2ckfA 454 1.39e-16 1uliA 460 3.07e-16 b.33.1.2,d.129.3.3 107921,107922 2bmoA 447 4.84e-16 b.33.1.2,d.129.3.3 128804,128805 1fqtA 112 7.55e-16 b.33.1.1 24441 2e4qA 109 8.29e-16 2b1xA 470 8.45e-16 b.33.1.2,d.129.3.3 127675,127676 1o7nA 449 1.89e-15 b.33.1.2,d.129.3.3 81162,81163 1ndoA 449 3.90e-15 b.33.1.2,d.129.3.3 24444,41323 1eg9A 449 3.97e-15 b.33.1.2,d.129.3.3 24443,41322 2de6D 115 5.14e-15 1sjgA 112 5.59e-15 b.33.1.1 105647 1vm9A 111 5.63e-15 b.33.1.1 108886 2q3wA 111 1.75e-14 b.33.1.1 139813 2i7fA 108 2.11e-14 3c0dA 119 5.15e-14 2jo6A 113 2.50e-13 1nykA 165 2.89e-10 b.33.1.1 86408 1rfs 139 7.53e-10 1rie 129 8.33e-10 1rfsA 139 8.61e-10 b.33.1.1 24434 1g8kB 133 1.48e-09 b.33.1.1 24435 2nvgA 141 2.34e-09 1rieA 129 5.62e-09 b.33.1.1 24427 1g8jB 133 1.46e-08 b.33.1.1 24439 1bccE 196 3.19e-08 b.33.1.1,f.23.12.1 24431,43699 2nwfA 141 3.42e-08 1ppjE 196 1.77e-07 b.33.1.1,f.23.12.1 104260,104261 2e74D 179 1.89e-07 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 2.58e-06 b.33.1.1 71745 1yiqA 689 10.53 2veqA 565 12.54 1i6pA 220 15.19 c.53.2.1 61848 2sfaA 191 16.46 b.47.1.1 25815 1g5cA 170 16.75 c.53.2.1 60264 1kxgA 152 17.74 b.22.1.1 73145 2dg5A 366 22.30 d.153.1.6 131500 2nqoA 376 23.94 d.153.1.6 138473 1ddzA 496 24.41 c.53.2.1,c.53.2.1 33372,33373 2d27A 149 24.88 2biiA 424 25.48 1qksA 567 26.57 a.3.1.2,b.70.2.1 15951,27710 6rlxA 24 28.19 2qmcA 377 28.94 2ad6A 571 29.16 b.70.1.1 126568 2v89A 82 41.90 1el6A 219 42.53 d.182.1.1 42606 2qmjA 870 46.24 2jg9C 131 46.99 1g72A 573 48.89 b.70.1.1 27680 1m9zA 111 49.08 g.7.1.3 78881 1kloA 162 50.41 g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1kevA 351 51.38 b.35.1.2,c.2.1.1 24749,29765 2d28C 149 51.95 1ktzB 122 56.06 g.7.1.3 68868 2jz8A 87 57.71 1zo0A 126 58.12 d.108.1.7 125416 2hf1A 68 59.06 3b2mA 295 63.97 1slqA 278 66.85 f.47.1.1 105719 1h91A 180 67.75 b.60.1.1 60805 2hesX 330 69.59 1ekjA 221 69.60 c.53.2.1 33364 2gagC 210 71.12 2fe8A 315 72.81 2i3oA 516 73.82 d.153.1.6 137027 2oizA 361 75.55 2hu5A 582 77.70 b.69.7.2,c.69.1.33 136763,136764 2q07A 306 78.71 2aheA 267 78.72 2quqA 562 82.57 1ylkA 172 83.80 1knmA 130 84.19 b.42.2.1 72781 2c2aA 258 84.42 a.30.2.1,d.122.1.3 129662,129663 2yvrA 50 89.30