# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z02A 446 4.47e-17 2de6A 392 6.10e-17 b.33.1.2,d.129.3.3 131415,131416 2gbwA 454 9.69e-16 2ckfA 454 1.06e-15 1uliA 460 2.74e-15 b.33.1.2,d.129.3.3 107921,107922 2e4qA 109 3.23e-15 2bmoA 447 3.44e-15 b.33.1.2,d.129.3.3 128804,128805 1fqtA 112 3.52e-15 b.33.1.1 24441 2b1xA 470 5.42e-15 b.33.1.2,d.129.3.3 127675,127676 1o7nA 449 1.13e-14 b.33.1.2,d.129.3.3 81162,81163 1vm9A 111 1.50e-14 b.33.1.1 108886 2de6D 115 1.56e-14 1sjgA 112 2.18e-14 b.33.1.1 105647 1ndoA 449 2.33e-14 b.33.1.2,d.129.3.3 24444,41323 1eg9A 449 2.93e-14 b.33.1.2,d.129.3.3 24443,41322 2q3wA 111 5.49e-14 b.33.1.1 139813 2i7fA 108 9.85e-14 3c0dA 119 1.90e-13 2jo6A 113 4.17e-13 1nykA 165 8.34e-10 b.33.1.1 86408 1rie 129 2.08e-09 1rfsA 139 2.48e-09 b.33.1.1 24434 1rfs 139 2.85e-09 1g8kB 133 3.74e-09 b.33.1.1 24435 2nvgA 141 7.58e-09 1rieA 129 9.94e-09 b.33.1.1 24427 1g8jB 133 5.78e-08 b.33.1.1 24439 1bccE 196 7.34e-08 b.33.1.1,f.23.12.1 24431,43699 2nwfA 141 1.06e-07 1ppjE 196 4.55e-07 b.33.1.1,f.23.12.1 104260,104261 2e74D 179 4.71e-07 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 6.89e-06 b.33.1.1 71745 1i6pA 220 9.585 c.53.2.1 61848 1yiqA 689 11.84 2d27A 149 13.22 2sfaA 191 14.98 b.47.1.1 25815 1g5cA 170 17.46 c.53.2.1 60264 2ad6A 571 21.21 b.70.1.1 126568 1ddzA 496 22.11 c.53.2.1,c.53.2.1 33372,33373 2veqA 565 22.39 2v89A 82 25.87 1zo0A 126 27.77 d.108.1.7 125416 1kxgA 152 29.96 b.22.1.1 73145 2hu5A 582 31.38 b.69.7.2,c.69.1.33 136763,136764 1g72A 573 32.70 b.70.1.1 27680 2jg9C 131 32.74 2jrfA 184 32.83 2biiA 424 34.03 1qksA 567 34.58 a.3.1.2,b.70.2.1 15951,27710 2jz8A 87 35.33 6rlxA 24 45.64 1el6A 219 48.00 d.182.1.1 42606 2nqoA 376 49.41 d.153.1.6 138473 2d28C 149 49.46 1yr2A 741 50.52 1kloA 162 52.60 g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1hxnA 219 53.04 b.66.1.1 27529 1ekjA 221 54.80 c.53.2.1 33364 1m9zA 111 55.28 g.7.1.3 78881 3bdrA 190 55.87 3b2mA 295 59.03 2oizA 361 60.19 2qmcA 377 60.27 2dg5A 366 60.45 d.153.1.6 131500 1ko9A 345 60.55 a.96.1.3,d.129.1.2 68717,68718 2hf1A 68 60.59 1kevA 351 61.81 b.35.1.2,c.2.1.1 24749,29765 1h91A 180 62.09 b.60.1.1 60805 1ktzB 122 66.39 g.7.1.3 68868 2q07A 306 66.56 1l0qA 391 71.94 b.1.3.1,b.69.2.3 77644,77645 2qcuA 501 73.22 2pm7B 297 77.82 2qmjA 870 79.70 1peaA 385 79.95 c.93.1.1 35662 1rvkA 382 82.93 c.1.11.2,d.54.1.1 97928,97929 2a5vA 213 88.37 1e44B 96 89.99 b.101.1.1 59220