# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2de6A 392 1.36e-15 b.33.1.2,d.129.3.3 131415,131416 1z02A 446 5.22e-15 1fqtA 112 1.27e-14 b.33.1.1 24441 2e4qA 109 1.51e-14 1sjgA 112 2.88e-14 b.33.1.1 105647 2gbwA 454 3.28e-14 1vm9A 111 3.51e-14 b.33.1.1 108886 2ckfA 454 3.96e-14 2de6D 115 1.15e-13 2bmoA 447 1.16e-13 b.33.1.2,d.129.3.3 128804,128805 2q3wA 111 1.64e-13 b.33.1.1 139813 2b1xA 470 1.98e-13 b.33.1.2,d.129.3.3 127675,127676 1uliA 460 2.26e-13 b.33.1.2,d.129.3.3 107921,107922 2i7fA 108 4.34e-13 1o7nA 449 7.72e-13 b.33.1.2,d.129.3.3 81162,81163 3c0dA 119 9.54e-13 1eg9A 449 1.35e-12 b.33.1.2,d.129.3.3 24443,41322 2jo6A 113 1.40e-12 1ndoA 449 1.52e-12 b.33.1.2,d.129.3.3 24444,41323 1rie 129 1.36e-08 1nykA 165 1.37e-08 b.33.1.1 86408 1rfs 139 2.38e-08 1g8kB 133 3.33e-08 b.33.1.1 24435 1rfsA 139 3.62e-08 b.33.1.1 24434 1rieA 129 4.81e-08 b.33.1.1 24427 2nvgA 141 2.19e-07 1g8jB 133 3.05e-07 b.33.1.1 24439 2e74D 179 9.02e-07 b.33.1.1,f.23.12.1 132049,132050 2nwfA 141 9.89e-07 1bccE 196 1.21e-06 b.33.1.1,f.23.12.1 24431,43699 1ppjE 196 1.21e-05 b.33.1.1,f.23.12.1 104260,104261 1jm1A 204 0.000164 b.33.1.1 71745 1qksA 567 12.41 a.3.1.2,b.70.2.1 15951,27710 1zo0A 126 13.77 d.108.1.7 125416 2qggA 182 24.81 1vqoK 132 35.88 b.39.1.1 120372 1k6aA 303 45.23 c.1.8.3 72081 1whiA 122 48.08 b.39.1.1 24810 1yloA 348 48.88 b.49.3.1,c.56.5.4 123659,123660 1fh9A 312 49.22 c.1.8.3 28913 2hu5A 582 50.83 b.69.7.2,c.69.1.33 136763,136764 1qe5A 266 59.16 c.56.2.1 33784 2jg9C 131 60.53 1ta3B 303 61.51 c.1.8.3 106732 1kloA 162 62.73 g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1whi 122 66.45 1i0vA 104 66.57 d.1.1.4 36054 1jwwA 80 67.52 d.58.17.1 71919 2bnjA 303 72.85 c.1.8.3 128832 1n82A 331 72.96 c.1.8.3 91703 1i1wA 303 74.90 c.1.8.3 76732 1cw0A 155 87.15 c.52.1.15 33333 1v7rA 186 89.34 c.51.4.1 100482