# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z02A 446 7.20e-17 2de6A 392 2.05e-16 b.33.1.2,d.129.3.3 131415,131416 2gbwA 454 8.67e-16 2ckfA 454 1.18e-15 2bmoA 447 3.19e-15 b.33.1.2,d.129.3.3 128804,128805 1fqtA 112 3.77e-15 b.33.1.1 24441 1uliA 460 3.96e-15 b.33.1.2,d.129.3.3 107921,107922 2e4qA 109 4.11e-15 2b1xA 470 4.18e-15 b.33.1.2,d.129.3.3 127675,127676 1o7nA 449 9.49e-15 b.33.1.2,d.129.3.3 81162,81163 1sjgA 112 1.89e-14 b.33.1.1 105647 1vm9A 111 2.36e-14 b.33.1.1 108886 1ndoA 449 2.50e-14 b.33.1.2,d.129.3.3 24444,41323 1eg9A 449 2.69e-14 b.33.1.2,d.129.3.3 24443,41322 2de6D 115 4.64e-14 2q3wA 111 1.07e-13 b.33.1.1 139813 2i7fA 108 2.07e-13 2jo6A 113 3.74e-13 3c0dA 119 4.01e-13 1nykA 165 3.90e-09 b.33.1.1 86408 1rie 129 6.95e-09 1rfsA 139 7.42e-09 b.33.1.1 24434 1rfs 139 8.38e-09 1rieA 129 2.77e-08 b.33.1.1 24427 1g8kB 133 2.99e-08 b.33.1.1 24435 2nvgA 141 2.50e-07 1g8jB 133 3.55e-07 b.33.1.1 24439 1bccE 196 4.82e-07 b.33.1.1,f.23.12.1 24431,43699 2e74D 179 1.72e-06 b.33.1.1,f.23.12.1 132049,132050 2nwfA 141 1.84e-06 1ppjE 196 2.70e-06 b.33.1.1,f.23.12.1 104260,104261 1jm1A 204 5.47e-06 b.33.1.1 71745 2d27A 149 9.328 1ko9A 345 31.46 a.96.1.3,d.129.1.2 68717,68718 1yloA 348 32.57 b.49.3.1,c.56.5.4 123659,123660 2veqA 565 34.79 2qsxA 218 37.01 2d28C 149 38.58 1yr2A 741 44.10 1ixcA 294 47.60 a.4.5.37,c.94.1.1 83764,83765 2b4hA 254 51.19 3b2mA 295 52.02 1qksA 567 52.89 a.3.1.2,b.70.2.1 15951,27710 1q67A 231 56.21 b.55.1.7 95960 1b1cA 181 56.43 c.23.5.2 31212 2qggA 182 57.48 2fcr 173 57.60 1zdsA 336 58.35 b.6.1.3,b.6.1.3 124952,124953 2p9mA 138 60.36 1btkA 169 60.69 b.55.1.1 26959 1wkaA 147 61.06 b.51.1.1 120978 1tqzA 133 67.43 b.55.1.11 119327 1i6pA 220 67.49 c.53.2.1 61848 1gaxA 862 71.27 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1ddzA 496 76.43 c.53.2.1,c.53.2.1 33372,33373 2hu5A 582 78.46 b.69.7.2,c.69.1.33 136763,136764 1yudA 170 80.62 b.82.1.16 124046 1cydA 244 82.45 c.2.1.2 29825 1yiqA 689 83.52 2pm7B 297 84.87 2apoA 357 84.97 b.122.1.1,d.265.1.2 127133,127134 1slqA 278 88.71 f.47.1.1 105719