# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z02A 446 1.31e-13 2gbwA 454 1.79e-13 2de6A 392 3.43e-13 b.33.1.2,d.129.3.3 131415,131416 2e4qA 109 8.79e-13 1fqtA 112 8.99e-13 b.33.1.1 24441 2ckfA 454 1.51e-12 3c0dA 119 1.60e-12 2b1xA 470 3.42e-12 b.33.1.2,d.129.3.3 127675,127676 1uliA 460 3.74e-12 b.33.1.2,d.129.3.3 107921,107922 2bmoA 447 3.78e-12 b.33.1.2,d.129.3.3 128804,128805 2de6D 115 8.93e-12 1vm9A 111 1.23e-11 b.33.1.1 108886 1sjgA 112 1.67e-11 b.33.1.1 105647 2jo6A 113 2.77e-11 1o7nA 449 3.30e-11 b.33.1.2,d.129.3.3 81162,81163 2i7fA 108 3.76e-11 1ndoA 449 5.08e-11 b.33.1.2,d.129.3.3 24444,41323 1eg9A 449 5.09e-11 b.33.1.2,d.129.3.3 24443,41322 2q3wA 111 7.30e-10 b.33.1.1 139813 1nykA 165 7.88e-07 b.33.1.1 86408 1bccE 196 1.72e-06 b.33.1.1,f.23.12.1 24431,43699 1g8kB 133 2.93e-06 b.33.1.1 24435 1rie 129 3.30e-06 1g8jB 133 3.47e-06 b.33.1.1 24439 1rfs 139 6.75e-06 1rieA 129 7.97e-06 b.33.1.1 24427 1ppjE 196 1.74e-05 b.33.1.1,f.23.12.1 104260,104261 1rfsA 139 2.56e-05 b.33.1.1 24434 2nvgA 141 0.000108 2nwfA 141 0.000316 2e74D 179 0.000534 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 0.01688 b.33.1.1 71745 2j8gA 339 1.386 1ut1A 148 3.610 b.2.3.6 108014 2bibA 547 3.801 b.109.1.1,d.157.1.8 128581,128582 2htaA 309 4.250 2iqyA 190 9.055 2gagC 210 10.21 2f2fA 222 11.16 b.42.2.1 132810 2aaaA 484 13.18 b.71.1.1,c.1.8.1 27777,28764 1h8gA 95 13.67 b.109.1.1 65735 1zvyA 136 13.68 2d7tH 139 13.83 1a7oH 116 14.95 b.1.1.1 19943 1a2yB 116 15.92 b.1.1.1 19927 1xfpA 142 17.16 b.1.1.1 109587 2vmhA 151 18.20 1x31C 206 19.78 1mvfA 135 21.79 b.1.1.1 85141 2bcmA 165 22.15 1uz5A 402 22.55 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1ybyA 215 23.11 1j05B 121 23.29 b.1.1.1 90736 2hewF 152 23.90 b.22.1.1 136364 1sr4A 206 23.92 b.42.2.1 105948 2f6eA 127 25.71 1kxqE 120 30.05 b.1.1.1 73171 1uebA 184 30.15 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1ltlA 279 32.29 b.40.4.11 84701 1a6vH 120 32.43 b.1.1.1 20257 1rjcA 137 33.86 1behA 187 34.70 b.17.1.1 23700 1rzfH 235 34.71 b.1.1.1,b.1.1.2 98150,98151 1cr5A 189 35.09 b.52.2.3,d.31.1.1 26931,38465 1oaqH 121 35.24 b.1.1.1 92707 1pzsA 208 35.36 b.1.8.1 104397 2cw9A 194 35.60 d.17.4.13 130920 1ftrA 296 37.13 d.58.33.1,d.58.33.1 39485,39486 1ef1A 294 38.59 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1zdsA 336 38.65 b.6.1.3,b.6.1.3 124952,124953 1zvhA 134 38.94 1e44B 96 39.89 b.101.1.1 59220 1wu2A 396 41.47 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1qpxA 218 41.63 b.1.11.1,b.7.2.1 22318,23200 2otuA 115 43.29 1xezA 721 43.65 2b7fA 116 44.16 1h09A 338 45.68 b.109.1.1,c.1.8.8 83420,83421 1mqkH 127 46.98 b.1.1.1 85053 2imjA 166 48.02 1x6oA 174 49.39 b.34.5.2,b.40.4.5 109493,109494 1pn2A 280 49.49 d.38.1.4,d.38.1.4 94930,94931 1snzA 344 50.29 b.30.5.4 98930 1noaA 113 50.43 b.1.7.1 22208 1o59A 355 51.66 b.18.1.22,b.18.1.22 92495,92496 1n4xH 120 52.21 b.1.1.1 85324 1zmyA 142 52.79 1qw1A 121 53.57 1lshA 1056 54.18 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2bypA 214 54.45 2vgpA 284 54.65 2j6gA 266 54.98 1qfmA 710 55.47 b.69.7.1,c.69.1.4 27673,34641 1m5sA 297 56.65 d.58.33.1,d.58.33.1 74511,74512 1qhoA 686 56.78 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1kn3A 183 58.22 b.17.1.1 72764 1b7aA 186 58.45 b.17.1.1 23705 1i9bA 217 58.98 b.96.1.1 62084 2qqrA 118 59.80 2je6I 251 59.92 2guyA 478 59.92 b.71.1.1,c.1.8.1 135754,135755 2otuB 118 60.08 1rrpB 134 61.95 b.55.1.3 26995 1b2pA 119 62.88 b.78.1.1 27998 1mfaH 120 63.27 b.1.1.1 19889 1j48A 110 63.38 b.1.7.1 84112 2f2uA 402 64.05 2qf3A 243 65.08 1xgyH 219 65.68 b.1.1.2 121985 1xxqA 161 65.93 1a7qH 116 66.81 b.1.1.1 19955 1i8kB 124 67.58 b.1.1.1 71131 1mbmA 198 67.74 b.47.1.3 78916 1t2jA 116 69.85 1mvuB 121 70.00 b.1.1.1 91475 1a12A 413 70.59 b.69.5.1 27663 1tjgH 237 71.76 b.1.1.1,b.1.1.2 112446,112447 1b37B 472 72.23 c.3.1.2,d.16.1.5 30390,37954 1u0qA 125 73.94 1h7zA 194 74.13 b.21.1.1 60733 2be1A 339 74.13 3bzcA 785 75.19 1go4A 205 75.31 d.135.1.1 70292 1gvmA 136 76.16 b.109.1.1 70612 2q0zX 339 76.22 2aaa 484 76.56 3b9vA 120 76.78 2bxxA 134 77.26 b.148.1.1 129446 1uacH 114 77.89 b.1.1.1 99132 3bj91 116 78.03 2ipuG 226 78.69 1y14B 171 78.82 b.40.4.5,d.230.1.1 116323,116324 2j6aA 141 79.61 1fwuA 134 79.65 b.42.2.2 25580 1sf9A 128 80.25 b.34.15.1 98831 2qqzA 126 82.90 2i45A 107 84.28 1ynlH 219 84.86 2io8A 619 87.11 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 2mbrA 340 88.04 d.145.1.2,d.146.1.1 41749,41762 2exnA 136 88.65 b.165.1.1 132562 1ap2B 123 89.15 b.1.1.1 20183 2r3uA 211 89.34 1uxyA 340 89.87 d.145.1.2,d.146.1.1 41748,41761