# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ckfA	454	5.05e-19		
1uliA	460	5.15e-19	b.33.1.2,d.129.3.3	107921,107922
2gbwA	454	5.58e-19		
1o7nA	449	1.35e-18	b.33.1.2,d.129.3.3	81162,81163
2b1xA	470	1.43e-18	b.33.1.2,d.129.3.3	127675,127676
2bmoA	447	1.44e-18	b.33.1.2,d.129.3.3	128804,128805
1z02A	446	3.17e-18		
2de6A	392	9.17e-18	b.33.1.2,d.129.3.3	131415,131416
2i7fA	108	1.84e-15		
2e4qA	109	5.56e-15		
1rfs	139	7.90e-15		
1fqtA	112	1.02e-14	b.33.1.1	24441
2q3wA	111	1.07e-14	b.33.1.1	139813
2de6D	115	2.27e-14		
1vm9A	111	2.51e-14	b.33.1.1	108886
1rfsA	139	7.36e-14	b.33.1.1	24434
3c0dA	119	3.63e-13		
1g8kB	133	7.34e-13	b.33.1.1	24435
1nykA	165	1.31e-12	b.33.1.1	86408
1rieA	129	1.70e-12	b.33.1.1	24427
2jo6A	113	1.75e-12		
1rie	129	2.74e-12		
2nvgA	141	3.11e-12		
2nwfA	141	7.57e-12		
2e74D	179	2.55e-11	b.33.1.1,f.23.12.1	132049,132050
1ppjE	196	4.81e-11	b.33.1.1,f.23.12.1	104260,104261
1jm1A	204	5.06e-11	b.33.1.1	71745
2hf1A	68	2.376		
2jvmA	80	5.911		
2jz8A	87	7.284		
2c2aA	258	7.861	a.30.2.1,d.122.1.3	129662,129663
1el6A	219	12.05	d.182.1.1	42606
2jrrA	67	15.50		
1esoA	154	17.28	b.1.8.1	22293
1x31C	206	19.54		
2qkbA	154	19.93		
2bibA	547	21.58	b.109.1.1,d.157.1.8	128581,128582
2j6aA	141	21.80		
1f5mA	180	22.23	d.110.2.1	40895
2qguA	211	25.86		
1h09A	338	26.88	b.109.1.1,c.1.8.8	83420,83421
2hqsA	415	29.58	b.68.4.1,c.51.2.1	136662,136663
1ybyA	215	30.15		
2p7iA	250	31.89		
2qggA	182	32.48		
2uvkA	357	33.03		
1yiqA	689	33.42		
2pw0A	397	33.71		
1jh3A	107	34.11	d.66.1.4	71661
1nszA	347	35.21	b.30.5.4	80724
1z9nA	177	35.66		
1b2pA	119	37.63	b.78.1.1	27998
1qksA	567	38.36	a.3.1.2,b.70.2.1	15951,27710
2p35A	259	39.18		
2ghsA	326	40.01	b.68.6.1	135209
1ekjA	221	42.01	c.53.2.1	33364
2i8aA	252	42.92		
2j8gA	339	44.77		
1dcjA	81	44.91	d.68.3.3	59115
1q7fA	286	44.92	b.68.9.1	96036
1xipA	388	45.62	b.69.14.1	115360
1g5cA	170	47.70	c.53.2.1	60264
2ad6A	571	48.13	b.70.1.1	126568
1ddzA	496	50.65	c.53.2.1,c.53.2.1	33372,33373
1i4uA	181	51.21	b.60.1.1	61732
2hesX	330	55.31		
3cggA	195	55.64		
2f6eA	127	57.87		
1jofA	365	60.34	b.69.10.1	71775
3c5mA	396	63.29		
2rdxA	379	64.38		
1k8kC	372	64.68	b.69.4.1	68308
1ylkA	172	64.88		
2d28C	149	65.00		
1sznA	417	66.65	b.71.1.1,c.1.8.1	106162,106163
1rj8A	164	67.03	b.22.1.1	97547
2nv4A	147	67.43		
2qr7A	342	68.78		
1y08A	323	71.57	d.3.1.12	116280
1uebA	184	72.91	b.34.5.2,b.40.4.5,b.40.4.5	107782,107783,107784
2aqpA	164	76.66		
2r3iA	298	77.54		
1yo3A	102	79.90		
1h75A	81	80.16	c.47.1.1	60716
3c5tA	122	80.66		
2qe8A	343	84.80		
2dg5A	366	85.79	d.153.1.6	131500
2jigA	224	86.39		
1yrzA	528	86.87	b.29.1.23,b.67.2.1	123948,123949
2hrdA	253	86.94		
2z14A	133	87.02		
2heuA	401	87.51		
1dm9A	133	87.55	d.66.1.3	39560
2pm7B	297	89.94