# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 3.18e-19 2ckfA 454 3.59e-19 1uliA 460 4.50e-19 b.33.1.2,d.129.3.3 107921,107922 1z02A 446 9.69e-19 2b1xA 470 1.10e-18 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 1.27e-18 b.33.1.2,d.129.3.3 128804,128805 1o7nA 449 1.38e-18 b.33.1.2,d.129.3.3 81162,81163 2de6A 392 6.82e-18 b.33.1.2,d.129.3.3 131415,131416 2i7fA 108 1.65e-15 2e4qA 109 2.41e-15 1rfs 139 6.00e-15 2q3wA 111 6.37e-15 b.33.1.1 139813 1fqtA 112 6.76e-15 b.33.1.1 24441 1vm9A 111 1.34e-14 b.33.1.1 108886 2de6D 115 1.56e-14 1rfsA 139 6.87e-14 b.33.1.1 24434 3c0dA 119 3.22e-13 1g8kB 133 4.40e-13 b.33.1.1 24435 1nykA 165 6.77e-13 b.33.1.1 86408 2jo6A 113 1.33e-12 1rieA 129 2.09e-12 b.33.1.1 24427 1rie 129 2.38e-12 2nvgA 141 4.53e-12 2nwfA 141 6.20e-12 2e74D 179 2.83e-11 b.33.1.1,f.23.12.1 132049,132050 1ppjE 196 6.04e-11 b.33.1.1,f.23.12.1 104260,104261 1jm1A 204 8.13e-11 b.33.1.1 71745 2hf1A 68 2.496 2jz8A 87 5.187 2jvmA 80 8.320 1el6A 219 11.32 d.182.1.1 42606 2bibA 547 12.09 b.109.1.1,d.157.1.8 128581,128582 2hqsA 415 12.13 b.68.4.1,c.51.2.1 136662,136663 2c2aA 258 12.36 a.30.2.1,d.122.1.3 129662,129663 1b2pA 119 14.98 b.78.1.1 27998 1x31C 206 15.70 1f5mA 180 16.02 d.110.2.1 40895 2qguA 211 16.67 2jrrA 67 17.33 1k8kC 372 18.91 b.69.4.1 68308 2qkbA 154 20.28 1esoA 154 21.30 b.1.8.1 22293 1h09A 338 22.12 b.109.1.1,c.1.8.8 83420,83421 2j6aA 141 22.64 2j6gA 266 25.89 1jofA 365 28.93 b.69.10.1 71775 1xeuA 263 30.08 2pw0A 397 31.15 1dm9A 133 31.96 d.66.1.3 39560 1rj8A 164 34.95 b.22.1.1 97547 1ybyA 215 36.17 2hesX 330 36.76 2v89A 82 40.40 2p7iA 250 41.18 1nszA 347 41.30 b.30.5.4 80724 2dg5A 366 41.46 d.153.1.6 131500 2j8gA 339 42.06 1jssA 224 44.26 d.129.3.2 71844 2rdxA 379 44.42 2qr7A 342 46.67 1z9nA 177 47.00 1m2tB 263 48.50 b.42.2.1,b.42.2.1 84762,84763 1qksA 567 49.65 a.3.1.2,b.70.2.1 15951,27710 2f6eA 127 50.51 2hu5A 582 51.36 b.69.7.2,c.69.1.33 136763,136764 2gagC 210 54.50 2ghsA 326 55.19 b.68.6.1 135209 2p35A 259 55.40 1jh3A 107 55.80 d.66.1.4 71661 1ekjA 221 56.69 c.53.2.1 33364 3c5mA 396 58.29 1n2aA 201 60.20 a.45.1.1,c.47.1.5 91553,91554 1ddzA 496 64.75 c.53.2.1,c.53.2.1 33372,33373 2dsxA 52 65.70 g.41.5.1 131699 2nqoA 376 66.14 d.153.1.6 138473 2nv4A 147 66.68 2i8aA 252 67.05 2d5lA 706 67.08 1yt5A 258 67.41 1gt1A 159 68.66 b.60.1.1 90515 1u0kA 288 70.15 d.21.1.2,d.21.1.2 107547,107548 2aznA 219 70.58 c.71.1.2 127608 1yiqA 689 70.71 3cggA 195 71.02 2qmcA 377 71.85 2d28C 149 74.10 1xtmA 175 74.53 2avwA 311 75.08 1ylkA 172 75.20 2qe8A 343 75.60 2c61A 469 76.83 1a0rB 340 76.87 b.69.4.1 27658 2pm7B 297 78.61 1rb9 53 78.65 2pvxA 54 79.41 1dcjA 81 79.90 d.68.3.3 59115 1yk4A 52 80.22 1alyA 146 80.24 b.22.1.1 23856 1brfA 53 80.72 g.41.5.1 45236 1g5cA 170 81.32 c.53.2.1 60264 3c5tA 122 81.60 2z2nA 299 81.81 1b13A 54 86.48 g.41.5.1 45227 1crzA 403 87.64 b.68.4.1,c.51.2.1 27629,33211 2r3iA 298 88.14 1p22A 435 89.36 a.158.1.1,b.69.4.1 87715,87716 2ojhA 297 89.74