# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ckfA 454 4.75e-21 1uliA 460 5.11e-21 b.33.1.2,d.129.3.3 107921,107922 2gbwA 454 5.46e-21 2bmoA 447 1.57e-20 b.33.1.2,d.129.3.3 128804,128805 2b1xA 470 1.62e-20 b.33.1.2,d.129.3.3 127675,127676 1o7nA 449 1.81e-20 b.33.1.2,d.129.3.3 81162,81163 1z02A 446 1.88e-20 2de6A 392 4.50e-20 b.33.1.2,d.129.3.3 131415,131416 2i7fA 108 2.24e-17 2e4qA 109 2.31e-17 1fqtA 112 5.50e-17 b.33.1.1 24441 1rfs 139 6.23e-17 2q3wA 111 1.54e-16 b.33.1.1 139813 2de6D 115 1.74e-16 1vm9A 111 1.93e-16 b.33.1.1 108886 1rfsA 139 1.47e-15 b.33.1.1 24434 3c0dA 119 1.13e-14 1rieA 129 2.57e-14 b.33.1.1 24427 1rie 129 2.89e-14 1g8kB 133 3.47e-14 b.33.1.1 24435 2jo6A 113 6.42e-14 2nvgA 141 7.53e-14 1nykA 165 9.87e-14 b.33.1.1 86408 2nwfA 141 2.42e-13 2e74D 179 3.52e-13 b.33.1.1,f.23.12.1 132049,132050 1ppjE 196 9.56e-13 b.33.1.1,f.23.12.1 104260,104261 1jm1A 204 2.98e-12 b.33.1.1 71745 2hf1A 68 0.7621 1pjxA 314 3.643 b.68.6.1 104167 1b2pA 119 3.908 b.78.1.1 27998 2jvmA 80 4.610 1q7fA 286 4.949 b.68.9.1 96036 2c2aA 258 5.644 a.30.2.1,d.122.1.3 129662,129663 2bibA 547 6.510 b.109.1.1,d.157.1.8 128581,128582 2jrrA 67 7.030 1x31C 206 7.060 1el6A 219 7.131 d.182.1.1 42606 1yiqA 689 8.256 2ghsA 326 8.790 b.68.6.1 135209 2hu5A 582 8.876 b.69.7.2,c.69.1.33 136763,136764 1h09A 338 9.164 b.109.1.1,c.1.8.8 83420,83421 1esoA 154 9.98 b.1.8.1 22293 2z2nA 299 11.13 2pw0A 397 13.24 2f6eA 127 13.44 1qksA 567 13.51 a.3.1.2,b.70.2.1 15951,27710 2dpfA 115 13.74 2ad6A 571 15.33 b.70.1.1 126568 1rwiA 270 17.28 b.68.9.1 97987 1m2tB 263 18.19 b.42.2.1,b.42.2.1 84762,84763 2gopA 347 18.21 3cngA 189 19.22 2v89A 82 20.75 2p7iA 250 21.20 2pbiB 354 21.21 2hqsA 415 21.60 b.68.4.1,c.51.2.1 136662,136663 2gnqA 336 22.04 1jpcA 109 22.31 b.78.1.1 27986 1xeuA 263 23.53 1nszA 347 23.91 b.30.5.4 80724 2jz8A 87 23.94 2qe8A 343 24.08 1kv9A 668 24.36 a.3.1.6,b.70.1.1 73056,73057 1ybyA 215 24.36 1f5mA 180 24.77 d.110.2.1 40895 2p35A 259 25.01 2h14A 317 26.55 1a0rB 340 27.21 b.69.4.1 27658 1wosA 364 28.76 b.44.2.1,d.250.1.1 109468,109469 1gotB 340 28.87 b.69.4.1 27648 1jofA 365 29.62 b.69.10.1 71775 2j8gA 339 32.47 2fp8A 322 32.50 1h75A 81 33.00 c.47.1.1 60716 2h9fA 396 33.13 2j6gA 266 33.56 2qkbA 154 34.46 1q1aA 289 34.88 c.31.1.5 95561 2j7nA 1022 34.89 2jdiD 482 35.42 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 1r77A 103 35.77 1uebA 184 35.78 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1v54F 98 36.71 g.41.5.3 100327 1ddzA 496 36.79 c.53.2.1,c.53.2.1 33372,33373 2gagC 210 36.97 2dsxA 52 37.21 g.41.5.1 131699 2d5lA 706 37.54 1lml 478 37.94 2bcjB 340 37.97 b.69.4.1 128289 2z0rA 103 40.14 1s1dA 331 41.22 b.67.3.1 98344 2cttA 104 41.62 2avwA 311 41.71 2j6aA 141 42.01 1nu5A 370 42.30 c.1.11.2,d.54.1.1 92183,92184 1npeA 267 42.34 b.68.5.1 92032 2oizA 361 42.38 1l0qA 391 44.14 b.1.3.1,b.69.2.3 77644,77645 1rb9 53 45.40 1kb0A 677 45.50 a.3.1.6,b.70.1.1 68378,68379 1w6sA 599 46.13 b.70.1.1 114284 2i8aA 252 46.20 1knmA 130 48.29 b.42.2.1 72781 2h0bA 184 48.45 2iy2A 72 48.80 2f2hA 773 49.83 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1b13A 54 51.75 g.41.5.1 45227 1je0A 236 51.85 c.56.2.1 66581 2rdxA 379 52.03 2ovrB 445 52.08 2qggA 182 52.79 1hxnA 219 53.54 b.66.1.1 27529 1rb9A 52 54.20 g.41.5.1 45214 2d1zA 436 54.40 2p4oA 306 55.31 3c5mA 396 55.78 1iroA 54 56.31 g.41.5.1 45223 2evrA 246 56.57 b.34.11.3,d.3.1.16 132440,132441 1yc5A 246 57.28 c.31.1.5 122910 2be1A 339 57.55 2hesX 330 58.31 2hrdA 253 58.96 1z9nA 177 60.69 2qr7A 342 61.06 2z3zA 706 61.12 2pveA 54 61.92 1vqoU 66 62.12 g.39.1.6 120382 2r3iA 298 62.58 2ri7A 174 63.22 1brfA 53 64.90 g.41.5.1 45236 2yueA 168 66.45 1dm9A 133 66.64 d.66.1.3 39560 1r0mA 375 66.98 c.1.11.2,d.54.1.1 104747,104748 1hq0A 295 67.01 d.194.1.1 61122 2ojhA 297 67.84 1epaA 164 68.42 b.60.1.1 27128 2agyA 361 68.48 6rxnA 45 68.62 g.41.5.1 45222 2aqmA 154 70.31 2pvxA 54 71.30 6rlxA 24 73.45 1utcA 363 74.27 a.118.1.4,b.69.6.1 99914,99915 3cggA 195 74.84 1rj8A 164 75.80 b.22.1.1 97547 2dchX 216 76.75 3bodA 178 76.82 2qxvA 361 79.54 1y08A 323 80.83 d.3.1.12 116280 2dg5A 366 81.71 d.153.1.6 131500 1aop 497 82.11 1p22A 435 83.76 a.158.1.1,b.69.4.1 87715,87716 3bdrA 190 83.81 2bbkH 355 84.55 b.69.2.1 27634 1nexB 464 86.37 a.158.1.1,b.69.4.1 80443,80444 1u0kA 288 88.34 d.21.1.2,d.21.1.2 107547,107548 1ekjA 221 88.71 c.53.2.1 33364