# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gbwA	454	1.71e-18		
1uliA	460	1.84e-18	b.33.1.2,d.129.3.3	107921,107922
2ckfA	454	2.07e-18		
2b1xA	470	3.36e-18	b.33.1.2,d.129.3.3	127675,127676
2bmoA	447	4.99e-18	b.33.1.2,d.129.3.3	128804,128805
1o7nA	449	5.03e-18	b.33.1.2,d.129.3.3	81162,81163
1z02A	446	9.69e-18		
2de6A	392	2.11e-17	b.33.1.2,d.129.3.3	131415,131416
2i7fA	108	6.25e-15		
2e4qA	109	7.08e-15		
1rfs	139	1.08e-14		
1fqtA	112	1.34e-14	b.33.1.1	24441
2de6D	115	3.08e-14		
1vm9A	111	4.27e-14	b.33.1.1	108886
2q3wA	111	4.49e-14	b.33.1.1	139813
1rfsA	139	1.42e-13	b.33.1.1	24434
3c0dA	119	1.05e-12		
1nykA	165	1.35e-12	b.33.1.1	86408
1rieA	129	3.61e-12	b.33.1.1	24427
1rie	129	4.69e-12		
2jo6A	113	4.81e-12		
1g8kB	133	5.25e-12	b.33.1.1	24435
2nvgA	141	8.67e-12		
2nwfA	141	3.03e-11		
2e74D	179	7.25e-11	b.33.1.1,f.23.12.1	132049,132050
1ppjE	196	8.24e-11	b.33.1.1,f.23.12.1	104260,104261
1jm1A	204	1.33e-10	b.33.1.1	71745
2hf1A	68	4.173		
2jvmA	80	9.211		
2c2aA	258	9.466	a.30.2.1,d.122.1.3	129662,129663
1el6A	219	11.30	d.182.1.1	42606
1yiqA	689	12.50		
1b2pA	119	15.75	b.78.1.1	27998
2jrrA	67	21.49		
2jz8A	87	23.79		
1x31C	206	23.92		
1f5mA	180	24.15	d.110.2.1	40895
2qkbA	154	25.82		
2hqsA	415	28.28	b.68.4.1,c.51.2.1	136662,136663
1h75A	81	30.55	c.47.1.1	60716
1q7fA	286	31.12	b.68.9.1	96036
2z2nA	299	31.23		
2ghsA	326	31.43	b.68.6.1	135209
1jofA	365	32.00	b.69.10.1	71775
1npeA	267	33.29	b.68.5.1	92032
1h09A	338	33.94	b.109.1.1,c.1.8.8	83420,83421
2rdxA	379	34.32		
1jpcA	109	34.40	b.78.1.1	27986
2hu5A	582	34.93	b.69.7.2,c.69.1.33	136763,136764
2ad6A	571	38.23	b.70.1.1	126568
1esoA	154	39.11	b.1.8.1	22293
2v89A	82	40.38		
2dpfA	115	42.24		
2j6aA	141	45.01		
1pjxA	314	47.94	b.68.6.1	104167
2f6eA	127	49.51		
1jh3A	107	51.75	d.66.1.4	71661
1dcjA	81	53.92	d.68.3.3	59115
2qguA	211	53.94		
1rwiA	270	53.97	b.68.9.1	97987
1hxnA	219	56.47	b.66.1.1	27529
1yo3A	102	56.77		
1xtmA	175	57.51		
1vr8A	142	58.64	d.312.1.1	120445
1qksA	567	64.13	a.3.1.2,b.70.2.1	15951,27710
2bibA	547	64.38	b.109.1.1,d.157.1.8	128581,128582
2be1A	339	66.73		
1gt1A	159	66.94	b.60.1.1	90515
1uebA	184	67.79	b.34.5.2,b.40.4.5,b.40.4.5	107782,107783,107784
2iy2A	72	67.99		
1i19A	561	68.37	d.58.32.3,d.145.1.1	61522,61523
1ddzA	496	69.88	c.53.2.1,c.53.2.1	33372,33373
1nszA	347	72.14	b.30.5.4	80724
2qggA	182	73.11		
2d28C	149	73.85		
2z0rA	103	73.94		
1xeuA	263	74.45		
1dm9A	133	74.76	d.66.1.3	39560
2d5lA	706	77.32		
1orvA	728	77.57	b.70.3.1,c.69.1.24	87354,87355
6rlxA	24	78.17		
3cngA	189	78.40		
1ew4A	106	79.16	d.82.2.1	40023
1ri6A	343	79.31	b.69.11.1	97503
2qr7A	342	80.13		
2dg5A	366	82.26	d.153.1.6	131500
1dzkA	157	83.04	b.60.1.1	27096
1v54F	98	83.27	g.41.5.3	100327
1yrzA	528	86.49	b.29.1.23,b.67.2.1	123948,123949
2jfrA	234	87.90		
2fp8A	322	88.14