# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1uliA 460 4.11e-19 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 4.27e-19 2gbwA 454 4.56e-19 2b1xA 470 1.00e-18 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 1.09e-18 b.33.1.2,d.129.3.3 128804,128805 1o7nA 449 1.19e-18 b.33.1.2,d.129.3.3 81162,81163 1z02A 446 2.66e-18 2de6A 392 8.13e-18 b.33.1.2,d.129.3.3 131415,131416 2i7fA 108 2.38e-15 1rfs 139 3.24e-15 2e4qA 109 3.72e-15 1fqtA 112 7.98e-15 b.33.1.1 24441 2q3wA 111 9.44e-15 b.33.1.1 139813 2de6D 115 1.20e-14 1vm9A 111 1.47e-14 b.33.1.1 108886 1rfsA 139 4.47e-14 b.33.1.1 24434 1nykA 165 3.59e-13 b.33.1.1 86408 3c0dA 119 6.46e-13 1g8kB 133 9.26e-13 b.33.1.1 24435 1rieA 129 9.39e-13 b.33.1.1 24427 1rie 129 1.05e-12 2nvgA 141 1.75e-12 2jo6A 113 3.42e-12 2nwfA 141 9.54e-12 2e74D 179 2.08e-11 b.33.1.1,f.23.12.1 132049,132050 1ppjE 196 2.38e-11 b.33.1.1,f.23.12.1 104260,104261 1jm1A 204 2.50e-11 b.33.1.1 71745 2hf1A 68 4.242 2jvmA 80 6.365 2qkbA 154 12.52 2jz8A 87 12.83 1f5mA 180 13.51 d.110.2.1 40895 1esoA 154 14.17 b.1.8.1 22293 1el6A 219 16.12 d.182.1.1 42606 2c2aA 258 17.10 a.30.2.1,d.122.1.3 129662,129663 2jrrA 67 17.20 1b2pA 119 19.18 b.78.1.1 27998 1yiqA 689 25.64 1x31C 206 28.64 2hqsA 415 29.36 b.68.4.1,c.51.2.1 136662,136663 2v89A 82 30.19 1orvA 728 31.08 b.70.3.1,c.69.1.24 87354,87355 2ghsA 326 31.80 b.68.6.1 135209 1jofA 365 34.39 b.69.10.1 71775 2j6aA 141 40.61 1xeuA 263 42.99 1h75A 81 43.02 c.47.1.1 60716 2be1A 339 45.71 1xtmA 175 46.95 1q7fA 286 48.39 b.68.9.1 96036 1uebA 184 48.53 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1jh3A 107 49.21 d.66.1.4 71661 1z9nA 177 49.50 1v54F 98 51.48 g.41.5.3 100327 2rdxA 379 55.32 1npeA 267 58.81 b.68.5.1 92032 2qguA 211 58.81 2qggA 182 58.87 1gt1A 159 60.72 b.60.1.1 90515 1dcjA 81 61.24 d.68.3.3 59115 1n2aA 201 61.66 a.45.1.1,c.47.1.5 91553,91554 1rj8A 164 62.15 b.22.1.1 97547 1h09A 338 63.39 b.109.1.1,c.1.8.8 83420,83421 1qksA 567 63.58 a.3.1.2,b.70.2.1 15951,27710 1jpcA 109 67.11 b.78.1.1 27986 2bibA 547 68.20 b.109.1.1,d.157.1.8 128581,128582 1ybyA 215 69.28 2jfrA 234 70.00 1yo3A 102 71.08 1m2tB 263 72.23 b.42.2.1,b.42.2.1 84762,84763 1ddzA 496 73.39 c.53.2.1,c.53.2.1 33372,33373 2dpfA 115 75.09 2f6eA 127 76.59 3bdrA 190 78.61 1i19A 561 81.29 d.58.32.3,d.145.1.1 61522,61523 1i4uA 181 81.50 b.60.1.1 61732 7odcA 424 82.72 b.49.2.3,c.1.6.1 26488,28650 2dg5A 366 84.37 d.153.1.6 131500 1hxnA 219 86.38 b.66.1.1 27529 1pjxA 314 86.39 b.68.6.1 104167 2nv4A 147 88.11 1r0mA 375 89.06 c.1.11.2,d.54.1.1 104747,104748