# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gbwA	454	2.22e-18		
1uliA	460	2.29e-18	b.33.1.2,d.129.3.3	107921,107922
2ckfA	454	2.29e-18		
2b1xA	470	4.59e-18	b.33.1.2,d.129.3.3	127675,127676
2bmoA	447	6.00e-18	b.33.1.2,d.129.3.3	128804,128805
1o7nA	449	6.03e-18	b.33.1.2,d.129.3.3	81162,81163
1z02A	446	1.27e-17		
2de6A	392	3.75e-17	b.33.1.2,d.129.3.3	131415,131416
2i7fA	108	8.23e-15		
1rfs	139	1.18e-14		
2e4qA	109	1.24e-14		
1fqtA	112	2.86e-14	b.33.1.1	24441
2q3wA	111	3.82e-14	b.33.1.1	139813
2de6D	115	4.60e-14		
1vm9A	111	6.15e-14	b.33.1.1	108886
1rfsA	139	1.71e-13	b.33.1.1	24434
1nykA	165	1.23e-12	b.33.1.1	86408
3c0dA	119	1.95e-12		
1rieA	129	2.08e-12	b.33.1.1	24427
1rie	129	2.40e-12		
1g8kB	133	3.11e-12	b.33.1.1	24435
2nvgA	141	4.90e-12		
2jo6A	113	8.39e-12		
2nwfA	141	2.83e-11		
1ppjE	196	4.86e-11	b.33.1.1,f.23.12.1	104260,104261
2e74D	179	5.83e-11	b.33.1.1,f.23.12.1	132049,132050
1jm1A	204	7.31e-11	b.33.1.1	71745
2hf1A	68	4.783		
2jvmA	80	7.583		
1f5mA	180	16.10	d.110.2.1	40895
2jz8A	87	17.98		
1el6A	219	19.83	d.182.1.1	42606
1esoA	154	20.25	b.1.8.1	22293
2qkbA	154	20.34		
2c2aA	258	22.78	a.30.2.1,d.122.1.3	129662,129663
2jrrA	67	23.24		
2v89A	82	24.59		
1yiqA	689	26.72		
1b2pA	119	27.16	b.78.1.1	27998
1jofA	365	32.86	b.69.10.1	71775
1orvA	728	38.29	b.70.3.1,c.69.1.24	87354,87355
2hqsA	415	40.35	b.68.4.1,c.51.2.1	136662,136663
1qksA	567	41.58	a.3.1.2,b.70.2.1	15951,27710
2ghsA	326	42.40	b.68.6.1	135209
1h75A	81	43.53	c.47.1.1	60716
1xeuA	263	44.93		
1v54F	98	45.70	g.41.5.3	100327
1dcjA	81	47.15	d.68.3.3	59115
1npeA	267	47.57	b.68.5.1	92032
1x31C	206	48.48		
2j6aA	141	49.31		
2qggA	182	54.79		
1uebA	184	56.23	b.34.5.2,b.40.4.5,b.40.4.5	107782,107783,107784
1z9nA	177	57.71		
1xtmA	175	58.85		
2be1A	339	60.44		
2rdxA	379	62.44		
1i19A	561	62.97	d.58.32.3,d.145.1.1	61522,61523
2qguA	211	68.28		
1jh3A	107	69.28	d.66.1.4	71661
1n2aA	201	71.71	a.45.1.1,c.47.1.5	91553,91554
1q7fA	286	72.76	b.68.9.1	96036
1gt1A	159	74.51	b.60.1.1	90515
1rj8A	164	76.25	b.22.1.1	97547
1ybyA	215	77.98		
1ddzA	496	78.26	c.53.2.1,c.53.2.1	33372,33373
1jpcA	109	78.53	b.78.1.1	27986
2qkdA	404	80.06		
2dg5A	366	80.11	d.153.1.6	131500
1hxnA	219	83.18	b.66.1.1	27529
1i4uA	181	87.89	b.60.1.1	61732
1h09A	338	89.06	b.109.1.1,c.1.8.8	83420,83421