# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gbwA	454	6.74e-24		
2ckfA	454	7.02e-24		
1uliA	460	7.98e-24	b.33.1.2,d.129.3.3	107921,107922
2b1xA	470	2.49e-23	b.33.1.2,d.129.3.3	127675,127676
2bmoA	447	2.95e-23	b.33.1.2,d.129.3.3	128804,128805
1o7nA	449	3.17e-23	b.33.1.2,d.129.3.3	81162,81163
1z02A	446	4.42e-22		
2de6A	392	1.24e-21	b.33.1.2,d.129.3.3	131415,131416
2i7fA	108	3.34e-19		
2e4qA	109	4.19e-19		
1fqtA	112	1.27e-18	b.33.1.1	24441
1rfs	139	1.47e-18		
2q3wA	111	3.09e-18	b.33.1.1	139813
1vm9A	111	4.53e-18	b.33.1.1	108886
2de6D	115	4.56e-18		
1rfsA	139	4.66e-17	b.33.1.1	24434
3c0dA	119	1.19e-16		
2jo6A	113	4.27e-16		
1rieA	129	1.97e-15	b.33.1.1	24427
1rie	129	3.38e-15		
1nykA	165	3.94e-15	b.33.1.1	86408
1g8kB	133	5.58e-15	b.33.1.1	24435
2nvgA	141	1.28e-14		
2e74D	179	2.10e-14	b.33.1.1,f.23.12.1	132049,132050
2nwfA	141	1.56e-13		
1ppjE	196	3.42e-13	b.33.1.1,f.23.12.1	104260,104261
1jm1A	204	3.44e-13	b.33.1.1	71745
2hf1A	68	4.444		
2jz8A	87	6.798		
1el6A	219	8.056	d.182.1.1	42606
2hqsA	415	9.510	b.68.4.1,c.51.2.1	136662,136663
2jrrA	67	10.76		
1f5mA	180	10.91	d.110.2.1	40895
2i1aA	148	15.03		
2v89A	82	17.12		
1x31C	206	17.63		
2jvmA	80	18.87		
2avwA	311	21.33		
2bibA	547	21.36	b.109.1.1,d.157.1.8	128581,128582
1ddzA	496	22.65	c.53.2.1,c.53.2.1	33372,33373
1qksA	567	23.60	a.3.1.2,b.70.2.1	15951,27710
2ojhA	297	26.03		
1h09A	338	26.18	b.109.1.1,c.1.8.8	83420,83421
1l0qA	391	28.80	b.1.3.1,b.69.2.3	77644,77645
1dcjA	81	29.45	d.68.3.3	59115
2re9A	181	30.73		
2qmcA	377	34.06		
2nqoA	376	34.17	d.153.1.6	138473
1bj7	156	34.77		
1rj8A	164	35.53	b.22.1.1	97547
2c2aA	258	39.12	a.30.2.1,d.122.1.3	129662,129663
2qggA	182	39.86		
1oqeA	144	40.13	b.22.1.1	87286
2j6aA	141	40.73		
1y08A	323	43.25	d.3.1.12	116280
1cc8A	73	44.59	d.58.17.1	39343
2z0rA	103	46.55		
1mw7A	240	50.35	e.39.1.1	79557
1vhmA	195	50.82	d.110.2.1	100691
1u5xA	140	51.04	b.22.1.1	113055
1qlpA	394	52.81	e.1.1.1	42628
2hrdA	253	55.83		
1ri6A	343	57.24	b.69.11.1	97503
1b2pA	119	57.71	b.78.1.1	27998
2v95A	371	59.26		
2qyxA	238	61.14		
1hgxA	183	61.54	c.61.1.1	34027
6rlxA	24	61.72		
2dg5A	366	63.17	d.153.1.6	131500
3bodA	178	70.00		
1bj7A	156	70.49	b.60.1.1	27113
2i8aA	252	74.44		
2p35A	259	75.53		
1i6pA	220	79.52	c.53.2.1	61848
1lfpA	249	82.98	e.39.1.1	73885
1ugxA	133	83.54		
2ol2A	395	85.93