# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1uliA 460 9.74e-18 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 9.79e-18 2gbwA 454 1.01e-17 2b1xA 470 1.93e-17 b.33.1.2,d.129.3.3 127675,127676 1o7nA 449 2.36e-17 b.33.1.2,d.129.3.3 81162,81163 2bmoA 447 2.56e-17 b.33.1.2,d.129.3.3 128804,128805 1z02A 446 5.75e-17 2de6A 392 1.41e-16 b.33.1.2,d.129.3.3 131415,131416 2e4qA 109 2.11e-14 2i7fA 108 2.11e-14 1fqtA 112 5.08e-14 b.33.1.1 24441 1rfs 139 6.55e-14 2de6D 115 1.10e-13 1vm9A 111 1.12e-13 b.33.1.1 108886 2q3wA 111 1.20e-13 b.33.1.1 139813 1rfsA 139 6.68e-13 b.33.1.1 24434 3c0dA 119 2.84e-12 1nykA 165 8.33e-12 b.33.1.1 86408 1rieA 129 9.12e-12 b.33.1.1 24427 2jo6A 113 9.39e-12 1rie 129 1.32e-11 2nvgA 141 1.44e-11 1g8kB 133 1.56e-11 b.33.1.1 24435 2nwfA 141 7.35e-11 1ppjE 196 2.09e-10 b.33.1.1,f.23.12.1 104260,104261 2e74D 179 2.39e-10 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 3.12e-10 b.33.1.1 71745 2hf1A 68 5.003 2jvmA 80 9.219 1el6A 219 10.47 d.182.1.1 42606 2c2aA 258 12.78 a.30.2.1,d.122.1.3 129662,129663 1b2pA 119 16.77 b.78.1.1 27998 1f5mA 180 16.99 d.110.2.1 40895 1x31C 206 18.24 1jpcA 109 20.07 b.78.1.1 27986 2dpfA 115 22.33 1yiqA 689 23.11 2qkbA 154 23.38 1q7fA 286 23.43 b.68.9.1 96036 2jz8A 87 25.19 2hqsA 415 27.35 b.68.4.1,c.51.2.1 136662,136663 1pjxA 314 28.14 b.68.6.1 104167 2bibA 547 29.49 b.109.1.1,d.157.1.8 128581,128582 2hu5A 582 29.96 b.69.7.2,c.69.1.33 136763,136764 2jrrA 67 30.09 1qksA 567 31.91 a.3.1.2,b.70.2.1 15951,27710 2qggA 182 32.86 1h75A 81 34.04 c.47.1.1 60716 1dm9A 133 37.28 d.66.1.3 39560 2qe8A 343 39.98 1jofA 365 42.91 b.69.10.1 71775 2ghsA 326 43.01 b.68.6.1 135209 1orvA 728 46.01 b.70.3.1,c.69.1.24 87354,87355 2ad6A 571 46.93 b.70.1.1 126568 2j6aA 141 47.48 2qguA 211 47.66 1jh3A 107 47.87 d.66.1.4 71661 1dcjA 81 49.26 d.68.3.3 59115 1yrzA 528 49.53 b.29.1.23,b.67.2.1 123948,123949 1vr8A 142 52.95 d.312.1.1 120445 2rdxA 379 54.08 2qyxA 238 54.11 2d28C 149 58.33 3bdrA 190 58.64 1yo3A 102 59.78 2f6eA 127 60.00 1h09A 338 61.21 b.109.1.1,c.1.8.8 83420,83421 2v89A 82 62.26 1nszA 347 62.48 b.30.5.4 80724 2gopA 347 63.37 2hesX 330 67.37 2avwA 311 67.45 1k8kC 372 69.19 b.69.4.1 68308 2z2nA 299 69.90 1esoA 154 70.39 b.1.8.1 22293 1ddzA 496 70.71 c.53.2.1,c.53.2.1 33372,33373 2bklA 695 71.43 2i8aA 252 71.48 1npeA 267 71.58 b.68.5.1 92032 1n2aA 201 73.81 a.45.1.1,c.47.1.5 91553,91554 1ylkA 172 74.63 1xeuA 263 75.41 2iy2A 72 75.79 1dzkA 157 78.11 b.60.1.1 27096 2r3iA 298 80.15 1ybyA 215 82.09 2p35A 259 83.17 2d5lA 706 83.43 2nvmA 126 84.27 d.326.1.1 138631 1i4uA 181 85.84 b.60.1.1 61732 2oizA 361 87.04 1g5cA 170 88.29 c.53.2.1 60264 2hrdA 253 88.53 1u0kA 288 88.63 d.21.1.2,d.21.1.2 107547,107548 1nu5A 370 89.71 c.1.11.2,d.54.1.1 92183,92184