# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1uliA 460 1.21e-21 b.33.1.2,d.129.3.3 107921,107922 2b1xA 470 5.25e-21 b.33.1.2,d.129.3.3 127675,127676 2ckfA 454 5.73e-21 2gbwA 454 6.22e-21 2bmoA 447 6.52e-21 b.33.1.2,d.129.3.3 128804,128805 1o7nA 449 8.30e-21 b.33.1.2,d.129.3.3 81162,81163 1z02A 446 9.07e-20 2de6A 392 2.35e-19 b.33.1.2,d.129.3.3 131415,131416 2i7fA 108 3.63e-17 1rfs 139 4.88e-17 2e4qA 109 6.64e-17 1fqtA 112 1.30e-16 b.33.1.1 24441 2q3wA 111 1.49e-16 b.33.1.1 139813 2de6D 115 3.19e-16 1vm9A 111 4.38e-16 b.33.1.1 108886 1rfsA 139 7.42e-16 b.33.1.1 24434 1rieA 129 1.95e-14 b.33.1.1 24427 1rie 129 2.44e-14 1g8kB 133 2.72e-14 b.33.1.1 24435 3c0dA 119 2.79e-14 1nykA 165 3.35e-14 b.33.1.1 86408 2nvgA 141 4.38e-14 2jo6A 113 5.45e-14 1jm1A 204 8.06e-13 b.33.1.1 71745 2nwfA 141 8.34e-13 1ppjE 196 1.20e-12 b.33.1.1,f.23.12.1 104260,104261 2e74D 179 1.64e-12 b.33.1.1,f.23.12.1 132049,132050 1ms9A 648 0.4266 b.29.1.15,b.68.1.1 85088,85089 1ygaA 342 6.013 2jvmA 80 6.239 2hf1A 68 6.901 1q7fA 286 7.752 b.68.9.1 96036 1ri6A 343 9.121 b.69.11.1 97503 1h09A 338 10.11 b.109.1.1,c.1.8.8 83420,83421 2p17A 277 11.52 1qksA 567 13.65 a.3.1.2,b.70.2.1 15951,27710 2dpfA 115 13.92 2jz8A 87 14.01 2eceA 462 14.13 1el6A 219 14.82 d.182.1.1 42606 1k32A 1045 15.30 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2p9wA 334 15.86 2qe8A 343 16.93 2nutA 769 17.24 1pguA 615 19.88 b.69.4.1,b.69.4.1 88069,88070 1y08A 323 21.24 d.3.1.12 116280 1jmxB 349 21.35 b.69.2.2 66906 1dcjA 81 21.41 d.68.3.3 59115 2hqsA 415 21.49 b.68.4.1,c.51.2.1 136662,136663 2i8aA 252 21.78 1e4eA 343 23.51 c.30.1.2,d.142.1.1 59221,59222 1a0rB 340 23.64 b.69.4.1 27658 2avwA 311 24.19 2irpA 208 24.27 2jrrA 67 24.47 1xtmA 175 25.45 2h88B 252 25.45 1w6sA 599 27.59 b.70.1.1 114284 2vr4A 846 27.67 1jtdB 273 27.80 b.69.5.2 67265 1xipA 388 28.19 b.69.14.1 115360 2hrdA 253 29.28 1esoA 154 30.03 b.1.8.1 22293 1r0mA 375 30.28 c.1.11.2,d.54.1.1 104747,104748 1a12A 413 30.49 b.69.5.1 27663 2owbA 335 31.13 1f5mA 180 31.28 d.110.2.1 40895 2jigA 224 31.29 1mqeA 207 31.31 d.113.1.1 91394 1b2pA 119 32.25 b.78.1.1 27998 1gt1A 159 32.56 b.60.1.1 90515 2j6aA 141 32.92 1el5A 389 33.53 c.3.1.2,d.16.1.3 30369,37937 2fgtA 417 34.23 2hu5A 582 34.33 b.69.7.2,c.69.1.33 136763,136764 2v89A 82 34.53 1m2tB 263 34.95 b.42.2.1,b.42.2.1 84762,84763 1jpcA 109 37.25 b.78.1.1 27986 1u0kA 288 38.15 d.21.1.2,d.21.1.2 107547,107548 2vgpA 284 38.47 1nszA 347 38.78 b.30.5.4 80724 1q1aA 289 39.54 c.31.1.5 95561 1k3iA 656 40.68 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2ghsA 326 41.51 b.68.6.1 135209 2qmjA 870 41.53 2o8bA 934 41.63 2bibA 547 41.96 b.109.1.1,d.157.1.8 128581,128582 2qyxA 238 43.53 2j8gA 339 44.12 1kqfB 294 44.79 d.58.1.5,f.23.22.1 75900,75901 2ojhA 297 45.03 1ejeA 192 45.43 b.45.1.2 25757 2hs3A 603 45.64 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 2uvkA 357 48.08 2ovrB 445 48.26 1tp9A 162 48.63 c.47.1.10 119306 1z9nA 177 49.09 2hoeA 380 49.38 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1p22A 435 49.57 a.158.1.1,b.69.4.1 87715,87716 2bg9E 370 50.09 2aqjA 538 50.35 2p4oA 306 51.08 2okxA 956 52.07 2ivfB 352 52.07 2z7bA 270 52.63 2dhoA 235 53.59 2jdiD 482 54.36 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 1vhmA 195 54.38 d.110.2.1 100691 1jh3A 107 54.95 d.66.1.4 71661 2yv5A 302 55.19 2pw0A 397 55.27 1kxgA 152 56.96 b.22.1.1 73145 1r77A 103 56.99 1rj8A 164 58.98 b.22.1.1 97547 1ybyA 215 59.39 1tuoA 464 59.78 2yzqA 282 61.51 1yudA 170 62.00 b.82.1.16 124046 2qxvA 361 62.06 1j31A 262 62.34 d.160.1.2 90808 2fp8A 322 62.39 2jhnA 295 62.93 1h75A 81 63.90 c.47.1.1 60716 3bt3A 148 64.72 2i1aA 148 65.42 1zjcA 418 65.70 e.60.1.1 125147 1agjA 242 66.74 b.47.1.1 25827 1xeuA 263 67.57 2be1A 339 67.64 2qgmA 445 71.89 1dzkA 157 72.34 b.60.1.1 27096 1sq9A 397 73.66 b.69.4.1 105889 1dm9A 133 74.14 d.66.1.3 39560 1crzA 403 74.69 b.68.4.1,c.51.2.1 27629,33211 1ii2A 524 75.50 c.91.1.1,c.109.1.1 66146,66147 1jz8A 1023 75.66 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1b3bA 415 76.79 c.2.1.7,c.58.1.1 30244,33892 2dg1A 333 76.94 b.68.6.1 131493 2rdxA 379 78.94 1w0pA 781 80.38 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1p5dX 463 81.00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1bj7 156 81.75 1extA 162 82.55 g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1w9pA 433 84.40 c.1.8.5,d.26.3.1 114412,114413 2evrA 246 84.42 b.34.11.3,d.3.1.16 132440,132441 3c5mA 396 84.91 2qf3A 243 85.37 2ar0A 541 85.51 c.66.1.45 127185 2i0kA 561 86.41 2p35A 259 86.42 2bdvA 231 88.18 d.303.1.1 128345 1nexB 464 88.29 a.158.1.1,b.69.4.1 80443,80444 1vliA 385 88.39 b.85.1.1,c.1.10.6 108830,108831 2gdqA 382 88.79 c.1.11.2,d.54.1.1 135020,135021 2qguA 211 89.26 1yspA 181 89.37