# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1uliA 460 5.13e-18 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 5.67e-18 2gbwA 454 5.90e-18 2b1xA 470 1.27e-17 b.33.1.2,d.129.3.3 127675,127676 1o7nA 449 1.28e-17 b.33.1.2,d.129.3.3 81162,81163 2bmoA 447 1.54e-17 b.33.1.2,d.129.3.3 128804,128805 1z02A 446 2.93e-17 2de6A 392 7.71e-17 b.33.1.2,d.129.3.3 131415,131416 2i7fA 108 1.36e-14 2e4qA 109 2.17e-14 1rfs 139 2.59e-14 1fqtA 112 5.01e-14 b.33.1.1 24441 2q3wA 111 6.49e-14 b.33.1.1 139813 2de6D 115 8.40e-14 1vm9A 111 1.36e-13 b.33.1.1 108886 1rfsA 139 3.42e-13 b.33.1.1 24434 1nykA 165 2.63e-12 b.33.1.1 86408 1rieA 129 2.85e-12 b.33.1.1 24427 1g8kB 133 2.99e-12 b.33.1.1 24435 1rie 129 3.29e-12 3c0dA 119 3.88e-12 2nvgA 141 4.49e-12 2jo6A 113 1.02e-11 2nwfA 141 4.78e-11 1ppjE 196 6.90e-11 b.33.1.1,f.23.12.1 104260,104261 1jm1A 204 7.20e-11 b.33.1.1 71745 2e74D 179 9.13e-11 b.33.1.1,f.23.12.1 132049,132050 2hf1A 68 5.089 2jvmA 80 6.160 1el6A 219 12.27 d.182.1.1 42606 1orvA 728 13.32 b.70.3.1,c.69.1.24 87354,87355 2hu5A 582 13.95 b.69.7.2,c.69.1.33 136763,136764 2jz8A 87 15.38 2qkbA 154 17.63 1f5mA 180 21.48 d.110.2.1 40895 2jrrA 67 21.53 2hqsA 415 22.14 b.68.4.1,c.51.2.1 136662,136663 2c2aA 258 22.73 a.30.2.1,d.122.1.3 129662,129663 2bibA 547 22.84 b.109.1.1,d.157.1.8 128581,128582 1yiqA 689 25.77 2v89A 82 27.32 1yt5A 258 29.26 1b2pA 119 33.90 b.78.1.1 27998 2j6aA 141 38.38 1jh3A 107 41.67 d.66.1.4 71661 1qksA 567 43.51 a.3.1.2,b.70.2.1 15951,27710 1jofA 365 44.60 b.69.10.1 71775 2qggA 182 44.85 2qyxA 238 45.75 1h75A 81 45.88 c.47.1.1 60716 2qguA 211 46.27 1yrzA 528 48.90 b.29.1.23,b.67.2.1 123948,123949 1esoA 154 49.39 b.1.8.1 22293 2ghsA 326 49.51 b.68.6.1 135209 1xeuA 263 49.89 1nszA 347 52.22 b.30.5.4 80724 1dcjA 81 52.54 d.68.3.3 59115 2pw0A 397 53.12 1x31C 206 53.12 1jpcA 109 54.24 b.78.1.1 27986 2dpfA 115 55.75 1rj8A 164 56.03 b.22.1.1 97547 2p35A 259 56.37 1dm9A 133 58.81 d.66.1.3 39560 1ddzA 496 60.79 c.53.2.1,c.53.2.1 33372,33373 1gt1A 159 62.20 b.60.1.1 90515 1bj7 156 63.07 1v54F 98 63.40 g.41.5.3 100327 1h09A 338 66.69 b.109.1.1,c.1.8.8 83420,83421 2qkdA 404 66.75 1ybyA 215 68.41 1ylkA 172 68.76 2i8aA 252 69.37 1i4uA 181 69.95 b.60.1.1 61732 1uebA 184 71.51 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2qe8A 343 72.66 1q7fA 286 74.64 b.68.9.1 96036 1dzkA 157 75.60 b.60.1.1 27096 2j6gA 266 76.29 3cggA 195 76.57 2pm7B 297 77.12 2avwA 311 77.19 2hesX 330 78.30 2f6eA 127 80.73 1m2tB 263 81.98 b.42.2.1,b.42.2.1 84762,84763 2ojhA 297 85.10 2rfiA 285 87.82 1k8kC 372 88.43 b.69.4.1 68308 1bj7A 156 89.26 b.60.1.1 27113 1npeA 267 89.42 b.68.5.1 92032 3c5mA 396 89.46