# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ckfA	454	1.44e-17		
2gbwA	454	1.68e-17		
1uliA	460	1.69e-17	b.33.1.2,d.129.3.3	107921,107922
1o7nA	449	3.91e-17	b.33.1.2,d.129.3.3	81162,81163
2b1xA	470	4.57e-17	b.33.1.2,d.129.3.3	127675,127676
2bmoA	447	4.80e-17	b.33.1.2,d.129.3.3	128804,128805
1z02A	446	9.35e-17		
2de6A	392	3.71e-16	b.33.1.2,d.129.3.3	131415,131416
2i7fA	108	4.66e-14		
1rfs	139	6.87e-14		
2e4qA	109	8.57e-14		
2q3wA	111	1.74e-13	b.33.1.1	139813
1fqtA	112	2.22e-13	b.33.1.1	24441
2de6D	115	3.48e-13		
1vm9A	111	4.94e-13	b.33.1.1	108886
1rfsA	139	9.93e-13	b.33.1.1	24434
1g8kB	133	5.24e-12	b.33.1.1	24435
1nykA	165	5.26e-12	b.33.1.1	86408
1rie	129	7.65e-12		
1rieA	129	9.08e-12	b.33.1.1	24427
3c0dA	119	1.00e-11		
2nvgA	141	1.36e-11		
2jo6A	113	3.61e-11		
2nwfA	141	1.14e-10		
1ppjE	196	1.65e-10	b.33.1.1,f.23.12.1	104260,104261
2e74D	179	1.84e-10	b.33.1.1,f.23.12.1	132049,132050
1jm1A	204	3.59e-10	b.33.1.1	71745
2jvmA	80	7.669		
1orvA	728	8.336	b.70.3.1,c.69.1.24	87354,87355
2hf1A	68	9.505		
1el6A	219	11.47	d.182.1.1	42606
2jz8A	87	15.70		
2v89A	82	16.01		
2qkbA	154	19.21		
2c2aA	258	23.57	a.30.2.1,d.122.1.3	129662,129663
1f5mA	180	23.75	d.110.2.1	40895
1jofA	365	26.20	b.69.10.1	71775
1esoA	154	26.63	b.1.8.1	22293
2hqsA	415	29.02	b.68.4.1,c.51.2.1	136662,136663
1xeuA	263	31.29		
1v54F	98	34.94	g.41.5.3	100327
2jrrA	67	35.70		
1dcjA	81	36.10	d.68.3.3	59115
1rj8A	164	43.16	b.22.1.1	97547
2qkdA	404	43.44		
1npeA	267	46.25	b.68.5.1	92032
1b2pA	119	49.33	b.78.1.1	27998
2ghsA	326	49.86	b.68.6.1	135209
2hu5A	582	50.31	b.69.7.2,c.69.1.33	136763,136764
2j6aA	141	52.48		
1i4uA	181	56.73	b.60.1.1	61732
1n2aA	201	57.20	a.45.1.1,c.47.1.5	91553,91554
7odcA	424	60.78	b.49.2.3,c.1.6.1	26488,28650
1x31C	206	60.82		
1nszA	347	63.14	b.30.5.4	80724
2qggA	182	65.14		
1pguA	615	68.52	b.69.4.1,b.69.4.1	88069,88070
1q1aA	289	70.45	c.31.1.5	95561
2tnfA	156	72.05	b.22.1.1	23880
1i19A	561	72.99	d.58.32.3,d.145.1.1	61522,61523
1jpcA	109	75.15	b.78.1.1	27986
2azpA	318	75.65		
2qguA	211	76.02		
2ntoA	201	76.10		
1h75A	81	76.50	c.47.1.1	60716
1qksA	567	77.61	a.3.1.2,b.70.2.1	15951,27710
1bj7	156	78.20		
2bklA	695	79.50		
2pvqA	201	79.77		
1k8kC	372	80.58	b.69.4.1	68308
1xtmA	175	81.52		
2i87A	364	82.09		
1yrzA	528	82.51	b.29.1.23,b.67.2.1	123948,123949
2rdxA	379	83.58		
2pw0A	397	84.06		
1weoA	93	85.27	g.44.1.1	114561
2rfiA	285	86.27		
1e6uA	321	86.27	c.2.1.2	29805
2pm7B	297	88.22		
1z9nA	177	88.27