# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gbwA	454	1.01e-17		
2ckfA	454	1.02e-17		
1uliA	460	1.07e-17	b.33.1.2,d.129.3.3	107921,107922
2bmoA	447	2.94e-17	b.33.1.2,d.129.3.3	128804,128805
1o7nA	449	3.05e-17	b.33.1.2,d.129.3.3	81162,81163
2b1xA	470	3.64e-17	b.33.1.2,d.129.3.3	127675,127676
1z02A	446	7.45e-17		
2de6A	392	1.68e-16	b.33.1.2,d.129.3.3	131415,131416
1rfs	139	3.05e-14		
2i7fA	108	3.25e-14		
2e4qA	109	5.24e-14		
1fqtA	112	1.38e-13	b.33.1.1	24441
2q3wA	111	1.38e-13	b.33.1.1	139813
2de6D	115	2.23e-13		
1vm9A	111	2.34e-13	b.33.1.1	108886
1rfsA	139	5.21e-13	b.33.1.1	24434
1g8kB	133	2.79e-12	b.33.1.1	24435
1nykA	165	5.12e-12	b.33.1.1	86408
2nvgA	141	5.37e-12		
1rie	129	5.86e-12		
1rieA	129	5.92e-12	b.33.1.1	24427
3c0dA	119	8.46e-12		
2jo6A	113	2.50e-11		
1ppjE	196	5.98e-11	b.33.1.1,f.23.12.1	104260,104261
2e74D	179	6.60e-11	b.33.1.1,f.23.12.1	132049,132050
2nwfA	141	8.40e-11		
1jm1A	204	1.09e-10	b.33.1.1	71745
2hf1A	68	3.432		
2jvmA	80	6.819		
2v89A	82	10.08		
1el6A	219	14.28	d.182.1.1	42606
1yiqA	689	17.27		
2c2aA	258	19.06	a.30.2.1,d.122.1.3	129662,129663
2hu5A	582	20.90	b.69.7.2,c.69.1.33	136763,136764
2bibA	547	26.32	b.109.1.1,d.157.1.8	128581,128582
2hqsA	415	27.75	b.68.4.1,c.51.2.1	136662,136663
2jz8A	87	29.53		
2qkbA	154	30.59		
1f5mA	180	31.12	d.110.2.1	40895
2j6aA	141	32.07		
2jrrA	67	34.43		
2gopA	347	35.14		
6rlxA	24	37.32		
1x31C	206	37.93		
1rj8A	164	41.25	b.22.1.1	97547
1xeuA	263	44.33		
2i8aA	252	44.38		
1h75A	81	46.48	c.47.1.1	60716
1esoA	154	48.30	b.1.8.1	22293
1b2pA	119	48.88	b.78.1.1	27998
1jofA	365	48.91	b.69.10.1	71775
1v54F	98	50.22	g.41.5.3	100327
1gt1A	159	53.40	b.60.1.1	90515
2rdxA	379	54.80		
1ddzA	496	55.39	c.53.2.1,c.53.2.1	33372,33373
2qggA	182	55.46		
1qksA	567	56.47	a.3.1.2,b.70.2.1	15951,27710
1nszA	347	57.87	b.30.5.4	80724
2p7iA	250	59.50		
1dcjA	81	62.63	d.68.3.3	59115
2ghsA	326	62.65	b.68.6.1	135209
2be1A	339	63.21		
1hxnA	219	66.68	b.66.1.1	27529
1pjxA	314	67.13	b.68.6.1	104167
2dg5A	366	67.15	d.153.1.6	131500
1q7fA	286	67.64	b.68.9.1	96036
2i1aA	148	73.65		
1nu5A	370	75.81	c.1.11.2,d.54.1.1	92183,92184
1i4uA	181	75.85	b.60.1.1	61732
2f6eA	127	77.12		
2p35A	259	78.67		
2hrdA	253	82.49		
2ad6A	571	82.62	b.70.1.1	126568
1yrzA	528	85.70	b.29.1.23,b.67.2.1	123948,123949
1lml	478	87.17		
1dm9A	133	88.24	d.66.1.3	39560
2hesX	330	89.93