# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ckfA	454	5.46e-20		
1uliA	460	5.81e-20	b.33.1.2,d.129.3.3	107921,107922
2gbwA	454	6.67e-20		
1o7nA	449	1.61e-19	b.33.1.2,d.129.3.3	81162,81163
2bmoA	447	1.92e-19	b.33.1.2,d.129.3.3	128804,128805
2b1xA	470	2.14e-19	b.33.1.2,d.129.3.3	127675,127676
1z02A	446	3.53e-19		
2de6A	392	9.16e-19	b.33.1.2,d.129.3.3	131415,131416
2i7fA	108	3.72e-16		
2e4qA	109	4.52e-16		
1rfs	139	8.37e-16		
1fqtA	112	1.31e-15	b.33.1.1	24441
2q3wA	111	1.42e-15	b.33.1.1	139813
2de6D	115	1.45e-15		
1vm9A	111	2.39e-15	b.33.1.1	108886
1rfsA	139	1.37e-14	b.33.1.1	24434
3c0dA	119	1.18e-13		
1nykA	165	1.73e-13	b.33.1.1	86408
1rieA	129	3.16e-13	b.33.1.1	24427
1rie	129	3.29e-13		
2jo6A	113	3.82e-13		
1g8kB	133	4.14e-13	b.33.1.1	24435
2nvgA	141	4.59e-13		
2nwfA	141	2.49e-12		
2e74D	179	5.81e-12	b.33.1.1,f.23.12.1	132049,132050
1jm1A	204	6.20e-12	b.33.1.1	71745
1ppjE	196	8.33e-12	b.33.1.1,f.23.12.1	104260,104261
2hf1A	68	2.794		
2jvmA	80	5.206		
2jz8A	87	7.382		
1el6A	219	10.36	d.182.1.1	42606
2v89A	82	10.49		
2qkbA	154	13.51		
2jrrA	67	14.98		
1xeuA	263	15.40		
1b2pA	119	17.56	b.78.1.1	27998
2c2aA	258	19.39	a.30.2.1,d.122.1.3	129662,129663
1f5mA	180	20.89	d.110.2.1	40895
2j6aA	141	21.43		
1x31C	206	26.44		
1jofA	365	27.46	b.69.10.1	71775
2bibA	547	28.94	b.109.1.1,d.157.1.8	128581,128582
1yiqA	689	29.47		
1dcjA	81	30.91	d.68.3.3	59115
2qggA	182	31.50		
2rdxA	379	32.51		
1q7fA	286	33.56	b.68.9.1	96036
2ghsA	326	34.42	b.68.6.1	135209
1hxnA	219	37.97	b.66.1.1	27529
1dm9A	133	38.54	d.66.1.3	39560
1npeA	267	42.05	b.68.5.1	92032
2hqsA	415	46.92	b.68.4.1,c.51.2.1	136662,136663
1ddzA	496	47.49	c.53.2.1,c.53.2.1	33372,33373
2i1aA	148	48.82		
1yrzA	528	50.33	b.29.1.23,b.67.2.1	123948,123949
1h09A	338	51.57	b.109.1.1,c.1.8.8	83420,83421
2ad6A	571	51.69	b.70.1.1	126568
2p7iA	250	51.70		
2p35A	259	54.06		
1uebA	184	57.17	b.34.5.2,b.40.4.5,b.40.4.5	107782,107783,107784
3cngA	189	58.15		
2bklA	695	60.48		
1h75A	81	63.88	c.47.1.1	60716
1esoA	154	64.60	b.1.8.1	22293
2ntoA	201	66.55		
1nszA	347	67.77	b.30.5.4	80724
2fp8A	322	68.84		
1qksA	567	69.29	a.3.1.2,b.70.2.1	15951,27710
2i8aA	252	72.44		
1pjxA	314	72.47	b.68.6.1	104167
1xeoA	168	74.96	d.167.1.1	121913
1v54F	98	76.84	g.41.5.3	100327
1bj7	156	77.62		
2pvqA	201	78.95		
2pw0A	397	79.28		
1ybyA	215	80.47		
2iy2A	72	81.53		
1n2aA	201	82.28	a.45.1.1,c.47.1.5	91553,91554
2be1A	339	82.38		
6rlxA	24	82.40		
2qe8A	343	82.93		
1rj8A	164	83.89	b.22.1.1	97547
2qguA	211	84.51		
1i4uA	181	85.04	b.60.1.1	61732
2r3iA	298	85.12		
2f6eA	127	86.47		
1r77A	103	87.53