# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ckfA	454	1.57e-22		
2gbwA	454	1.66e-22		
1uliA	460	4.87e-22	b.33.1.2,d.129.3.3	107921,107922
2bmoA	447	5.96e-22	b.33.1.2,d.129.3.3	128804,128805
2b1xA	470	1.34e-21	b.33.1.2,d.129.3.3	127675,127676
1o7nA	449	2.24e-21	b.33.1.2,d.129.3.3	81162,81163
2de6A	392	8.07e-21	b.33.1.2,d.129.3.3	131415,131416
1z02A	446	1.78e-20		
2i7fA	108	5.65e-18		
2e4qA	109	6.77e-18		
1rfs	139	1.14e-17		
1vm9A	111	2.37e-17	b.33.1.1	108886
2q3wA	111	3.34e-17	b.33.1.1	139813
2de6D	115	3.38e-17		
1fqtA	112	5.24e-17	b.33.1.1	24441
1rfsA	139	3.29e-16	b.33.1.1	24434
3c0dA	119	3.81e-15		
2jo6A	113	2.60e-14		
1g8kB	133	4.30e-14	b.33.1.1	24435
1rie	129	8.53e-14		
1rieA	129	1.64e-13	b.33.1.1	24427
1nykA	165	2.01e-13	b.33.1.1	86408
2e74D	179	3.77e-13	b.33.1.1,f.23.12.1	132049,132050
2nvgA	141	5.48e-13		
2nwfA	141	2.78e-12		
1ppjE	196	2.02e-11	b.33.1.1,f.23.12.1	104260,104261
1jm1A	204	7.97e-11	b.33.1.1	71745
2hqsA	415	9.049	b.68.4.1,c.51.2.1	136662,136663
2qyxA	238	10.65		
2hf1A	68	11.86		
1el6A	219	12.84	d.182.1.1	42606
2qggA	182	14.04		
2ojhA	297	16.26		
1ekjA	221	21.36	c.53.2.1	33364
2jz8A	87	21.42		
2jvmA	80	24.54		
1epaA	164	26.35	b.60.1.1	27128
1bj7	156	30.56		
2bibA	547	32.55	b.109.1.1,d.157.1.8	128581,128582
2f6eA	127	32.90		
2jrrA	67	33.09		
1bj7A	156	33.27	b.60.1.1	27113
2j7nA	1022	34.08		
1orvA	728	36.58	b.70.3.1,c.69.1.24	87354,87355
2hlvA	160	36.78		
1ifqA	138	43.18	d.110.4.1	62350
1rj8A	164	45.15	b.22.1.1	97547
2gopA	347	48.88		
1bebA	162	48.91	b.60.1.1	27115
1zfjA	491	53.21	c.1.5.1,d.37.1.1,d.37.1.1	28638,38540,38541
2j6gA	266	57.58		
1dzkA	157	57.65	b.60.1.1	27096
1tuoA	464	59.47		
1xeuA	263	61.29		
1r7mA	235	61.64	d.95.2.1,d.95.2.1	111713,111714
1sznA	417	64.14	b.71.1.1,c.1.8.1	106162,106163
1dcjA	81	64.71	d.68.3.3	59115
1ym3A	215	65.41		
1gm6A	175	73.44	b.60.1.1	70272
2pa7A	141	79.19		
2ifqA	105	81.74	c.47.1.1	137343
1gsoA	431	82.54	b.84.2.1,c.30.1.1,d.142.1.2	28240,31647,41492
1u34A	119	84.10	g.76.1.1	107634
2ri7A	174	84.38		
1mw7A	240	85.31	e.39.1.1	79557
1zndA	174	85.40	b.60.1.1	125380
2hzfA	114	87.18		
1cc8A	73	87.47	d.58.17.1	39343
1jssA	224	89.05	d.129.3.2	71844