# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ckfA 454 1.85e-21 1uliA 460 1.87e-21 b.33.1.2,d.129.3.3 107921,107922 2gbwA 454 2.86e-21 2b1xA 470 5.17e-21 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 6.61e-21 b.33.1.2,d.129.3.3 128804,128805 1o7nA 449 7.70e-21 b.33.1.2,d.129.3.3 81162,81163 1z02A 446 1.81e-20 2de6A 392 2.14e-19 b.33.1.2,d.129.3.3 131415,131416 2e4qA 109 9.01e-17 2i7fA 108 1.05e-16 1rfs 139 1.34e-16 2de6D 115 5.97e-16 1vm9A 111 6.17e-16 b.33.1.1 108886 1fqtA 112 7.57e-16 b.33.1.1 24441 2q3wA 111 1.08e-15 b.33.1.1 139813 1rfsA 139 2.98e-15 b.33.1.1 24434 3c0dA 119 4.78e-14 2jo6A 113 7.08e-14 1rieA 129 2.12e-13 b.33.1.1 24427 1rie 129 2.17e-13 1g8kB 133 4.13e-13 b.33.1.1 24435 1nykA 165 4.67e-13 b.33.1.1 86408 2nwfA 141 1.69e-12 2nvgA 141 1.72e-12 2e74D 179 2.97e-12 b.33.1.1,f.23.12.1 132049,132050 1ppjE 196 1.26e-11 b.33.1.1,f.23.12.1 104260,104261 1jm1A 204 2.21e-11 b.33.1.1 71745 2hqsA 415 6.191 b.68.4.1,c.51.2.1 136662,136663 1oc2A 348 14.60 c.2.1.2 92765 1orrA 347 19.36 c.2.1.2 93460 1l0qA 391 19.50 b.1.3.1,b.69.2.3 77644,77645 2ojhA 297 20.10 2jigA 224 22.17 2qyxA 238 23.57 2qggA 182 23.76 1f5mA 180 25.85 d.110.2.1 40895 2hf1A 68 26.61 2jvmA 80 33.36 1r6dA 337 33.64 c.2.1.2 97148 1yudA 170 34.36 b.82.1.16 124046 2ivfB 352 34.60 2j7nA 1022 36.11 1gxrA 337 37.94 b.69.4.1 70722 2c5aA 379 39.09 c.2.1.2 129894 2pa7A 141 39.74 2rdxA 379 40.75 2qe8A 343 42.48 1yeyA 444 44.65 c.1.11.2,d.54.1.1 116664,116665 1epaA 164 46.31 b.60.1.1 27128 1gpr 162 48.71 1qksA 567 50.56 a.3.1.2,b.70.2.1 15951,27710 1ddzA 496 50.63 c.53.2.1,c.53.2.1 33372,33373 1el6A 219 51.09 d.182.1.1 42606 2c2aA 258 57.91 a.30.2.1,d.122.1.3 129662,129663 2jrrA 67 58.37 1orvA 728 58.77 b.70.3.1,c.69.1.24 87354,87355 2i87A 364 59.47 1gprA 162 59.57 b.84.3.1 28267 1mc0A 368 61.23 d.110.2.1,d.110.2.1 78937,78938 1ekjA 221 63.84 c.53.2.1 33364 1rj8A 164 70.84 b.22.1.1 97547 2h0bA 184 71.84 2d28C 149 74.33 2im9A 333 76.39 d.3.1.13 137508 1ifqA 138 78.68 d.110.4.1 62350 1i6pA 220 79.37 c.53.2.1 61848 1f3zA 161 82.61 b.84.3.1 28273 1dbqA 289 85.70 c.93.1.1 35666 1r26A 125 86.04 c.47.1.1 96847 1lfpA 249 86.76 e.39.1.1 73885 1pguA 615 88.69 b.69.4.1,b.69.4.1 88069,88070 2jz8A 87 89.31