# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 3.76e-17 1uliA 460 8.37e-17 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 1.59e-16 2b1xA 470 1.62e-16 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 2.55e-16 b.33.1.2,d.129.3.3 128804,128805 1o7nA 449 8.47e-16 b.33.1.2,d.129.3.3 81162,81163 1z02A 446 1.23e-15 2de6A 392 7.31e-15 b.33.1.2,d.129.3.3 131415,131416 3c0dA 119 1.20e-13 1fqtA 112 7.81e-13 b.33.1.1 24441 2e4qA 109 1.41e-12 2jo6A 113 3.57e-12 2de6D 115 7.43e-12 2i7fA 108 8.77e-12 1vm9A 111 4.20e-11 b.33.1.1 108886 2q3wA 111 6.76e-11 b.33.1.1 139813 1rfsA 139 1.09e-09 b.33.1.1 24434 1rfs 139 5.19e-09 1nykA 165 5.39e-08 b.33.1.1 86408 1g8kB 133 5.80e-08 b.33.1.1 24435 2nwfA 141 6.02e-08 1rie 129 1.96e-07 1ppjE 196 1.97e-07 b.33.1.1,f.23.12.1 104260,104261 1rieA 129 9.00e-07 b.33.1.1 24427 2e74D 179 9.55e-07 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 1.72e-05 b.33.1.1 71745 2nvgA 141 2.45e-05 1ut1A 148 3.289 b.2.3.6 108014 1lshA 1056 4.343 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2j8gA 339 5.769 2z1aA 552 7.193 1at0A 145 7.313 b.86.1.1 28374 1zvyA 136 7.706 1mw7A 240 7.713 e.39.1.1 79557 1wsrA 375 8.362 1fjjA 159 8.776 b.17.1.2 59852 1h09A 338 9.99 b.109.1.1,c.1.8.8 83420,83421 2avwA 311 10.38 1o7iA 119 10.48 b.40.4.3 86642 2ja9A 175 10.91 1pj5A 830 10.95 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1xfpA 142 11.10 b.1.1.1 109587 2qqrA 118 12.16 2uwnA 187 13.05 1v5vA 401 14.05 b.44.2.1,d.250.1.1 113539,113540 1ihkA 174 14.14 b.42.1.1 62384 1oaqH 121 15.66 b.1.1.1 92707 1y37A 304 15.90 2pz4A 239 16.22 2ql3A 209 17.04 2z5eA 122 17.86 1el6A 219 20.67 d.182.1.1 42606 1yx2A 365 21.05 1b2pA 119 21.90 b.78.1.1 27998 2gfaA 119 21.95 b.34.9.1,b.34.9.1 135089,135090 2bcmA 165 22.09 2gc9A 179 24.16 b.60.1.6 134972 1ro2A 216 24.26 d.264.1.2 97665 2imjA 166 24.55 1wosA 364 25.42 b.44.2.1,d.250.1.1 109468,109469 2bgzA 299 25.54 1uebA 184 26.00 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2q0zX 339 26.04 1si6X 282 26.17 d.151.1.2 118968 1at0 145 26.82 1j05B 121 27.17 b.1.1.1 90736 1ro0A 216 27.61 d.264.1.2 97664 2id0A 644 28.10 1wxxA 382 28.75 b.122.1.9,c.66.1.51 121418,121419 2d7tH 139 30.58 2ahnA 222 30.95 2e27H 126 32.25 2bw4A 340 34.77 b.6.1.3,b.6.1.3 129320,129321 1y08A 323 34.88 d.3.1.12 116280 1uthA 315 35.52 c.94.1.1 108032 1ao5A 237 35.63 b.47.1.2 26334 2as0A 396 36.28 b.122.1.9,c.66.1.51 127227,127228 1krhA 338 38.19 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2jv2A 83 38.36 1zkdA 387 42.61 c.66.1.52 125184 1xezA 721 42.78 2pbcA 102 43.06 3b49A 211 43.93 2mbrA 340 44.72 d.145.1.2,d.146.1.1 41749,41762 2gagC 210 44.93 2f2fA 222 45.55 b.42.2.1 132810 1ybyA 215 45.69 2ahdA 165 45.70 d.159.1.7 126752 3b9vA 120 47.50 2gu1A 361 47.61 2gagA 965 49.02 2hqkA 219 51.02 1rjcA 137 51.34 2p8tA 200 51.45 2h5oA 234 51.47 2otuA 115 51.68 2h2tB 175 52.55 1hl9A 449 52.56 b.71.1.3,c.1.8.11 90650,90651 1mvfA 135 52.89 b.1.1.1 85141 1wi5A 119 53.10 b.40.4.5 114661 2oggA 152 53.14 2p19A 149 54.27 1twfI 122 55.46 g.41.3.1,g.41.3.1 112733,112734 1kxqE 120 55.90 b.1.1.1 73171 1a2yB 116 57.16 b.1.1.1 19927 2pw0A 397 57.49 2qmcA 377 57.98 1n4xH 120 58.08 b.1.1.1 85324 2vmhA 151 62.62 2geyA 158 63.44 2eb0A 307 64.77 1vi3A 170 65.33 b.17.1.2 100730 1cyx 205 66.22 1yleA 342 66.45 d.108.1.8 123647 1wmdA 434 67.72 b.18.1.20,c.41.1.1 109408,109409 1oe1A 336 68.71 b.6.1.3,b.6.1.3 86891,86892 2nqoA 376 69.03 d.153.1.6 138473 2p4oA 306 69.19 1a6dB 543 69.31 a.129.1.2,c.8.5.2,d.56.1.2 19489,30820,38937 3bkwA 243 69.35 1zvhA 134 70.24 3bwgA 239 71.12 2bklA 695 72.06 1wlgA 299 72.79 b.152.1.1 114726 1cyxA 205 73.04 b.6.1.2 23023 1vr5A 547 75.41 c.94.1.1 120437 1xkpC 143 76.25 d.198.1.1 122088 2j4xA 213 76.28 1ftrA 296 77.11 d.58.33.1,d.58.33.1 39485,39486 1mvuB 121 78.51 b.1.1.1 91475 2nvaA 372 78.78 1zysA 273 78.79 2h9bA 312 79.10 1i6aA 219 80.36 c.94.1.1 61827 1w24A 182 82.97 d.159.1.7 120579 2h0bA 184 85.68 2qikA 285 86.03 2bibA 547 86.56 b.109.1.1,d.157.1.8 128581,128582 2amdA 311 86.62 2a90A 240 87.59 2hqsA 415 87.75 b.68.4.1,c.51.2.1 136662,136663 1uxyA 340 88.52 d.145.1.2,d.146.1.1 41748,41761 1v9yA 167 88.65 d.110.3.2 108454 1kl9A 182 89.24 a.60.14.1,b.40.4.5 111574,111575 1j8rA 196 89.39 b.2.3.3 62745 2c1iA 431 89.63 c.6.2.3,d.341.1.1 129636,129637 1x31C 206 89.73 2exnA 136 89.89 b.165.1.1 132562