# List of top-scoring protein chains for T0391.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1uliA	460	8.91e-13	b.33.1.2,d.129.3.3	107921,107922
2ckfA	454	1.30e-12		
2b1xA	470	2.02e-12	b.33.1.2,d.129.3.3	127675,127676
1wqlA	459	4.05e-12	b.33.1.2,d.129.3.3	121170,121171
2gbwA	454	4.25e-12		
2hmjA	449	1.37e-11	b.33.1.2,d.129.3.3	136585,136586
1o7nA	449	1.37e-11	b.33.1.2,d.129.3.3	81162,81163
2bmoA	447	1.70e-11	b.33.1.2,d.129.3.3	128804,128805
2de6A	392	2.22e-11	b.33.1.2,d.129.3.3	131415,131416
1z02A	446	5.29e-11		
2i7fA	108	2.09e-08		
2de6D	115	2.13e-08		
1fqtA	112	6.41e-08	b.33.1.1	24441
2e4qA	109	2.03e-07		
1sjgA	112	5.59e-07	b.33.1.1	105647
2q3wA	111	9.14e-07	b.33.1.1	139813
2jzaA	130	1.49e-06		
2jo6A	113	6.02e-06		
3c0dA	119	2.33e-05		
1nykA	165	0.01742	b.33.1.1	86408
2qjyC	187	0.01756		
2qjkC	179	0.01766		
2numA	141	0.02086		
1jm1A	204	0.02117	b.33.1.1	71745
2nvgA	141	0.02312		
2qjpC	179	0.02320		
2nukA	141	0.02409		
1rfsA	139	0.02414	b.33.1.1	24434
2nveA	141	0.02646		
2nwfA	141	0.03457		
2nvfA	141	0.04100		
2e74D	179	0.04901	b.33.1.1,f.23.12.1	132049,132050
1vf5D	179	0.05448	b.33.1.1,f.23.12.1	100583,100584
1q90C	127	0.09614	b.33.1.1	96242
1zrtE	191	0.1025		
1bccE	196	0.1487	b.33.1.1,f.23.12.1	24431,43699
1ppjE	196	0.1488	b.33.1.1,f.23.12.1	104260,104261
1rieA	129	0.1646	b.33.1.1	24427
1kb9E	185	0.1702	b.33.1.1,f.23.12.1	77319,77320
1g8kB	133	0.4243	b.33.1.1	24435
1g8jB	133	0.4509	b.33.1.1	24439
1cliA	345	27.50	d.79.4.1,d.139.1.1	39816,41459
2pbyA	308	36.41		
2gebA	185	53.03		
1r77A	103	65.29		
1y4zB	512	66.53		
1y5iB	512	66.97	d.58.1.5	122641
1ulkA	126	67.64	g.3.1.1,g.3.1.1,g.3.1.1	99559,99560,99561
1yfzA	205	75.19	c.61.1.1	123098
2pkpA	170	88.12