# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 6.74e-21 1uliA 460 9.73e-21 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 1.08e-20 2b1xA 470 2.85e-20 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 3.45e-20 b.33.1.2,d.129.3.3 128804,128805 2de6A 392 3.78e-20 b.33.1.2,d.129.3.3 131415,131416 1o7nA 449 8.04e-20 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 9.79e-20 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 6.92e-19 2e4qA 109 2.73e-16 1fqtA 112 2.99e-16 b.33.1.1 24441 2i7fA 108 5.59e-16 3c0dA 119 8.10e-16 1vm9A 111 8.85e-16 b.33.1.1 108886 1rfs 139 9.77e-16 1rie 129 1.76e-15 1rfsA 139 2.09e-15 b.33.1.1 24434 2de6D 115 3.12e-15 1nykA 165 3.36e-15 b.33.1.1 86408 1sjgA 112 3.96e-15 b.33.1.1 105647 2q3wA 111 5.33e-15 b.33.1.1 139813 1g8kB 133 9.45e-15 b.33.1.1 24435 1rieA 129 1.29e-14 b.33.1.1 24427 2nvgA 141 1.80e-14 2jo6A 113 2.12e-14 2nwfA 141 2.64e-13 2e74D 179 7.83e-13 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 1.61e-11 b.33.1.1 71745 1ppjE 196 2.50e-11 b.33.1.1,f.23.12.1 104260,104261 2hf1A 68 1.223 1gof 639 2.392 2ct7A 86 2.873 g.44.1.4 130791 2jvmA 80 2.928 1nszA 347 4.595 b.30.5.4 80724 2jrrA 67 4.770 2h8gA 267 10.96 1ijqA 316 13.04 b.68.5.1,g.3.11.1 62506,62507 1el6A 219 13.43 d.182.1.1 42606 1k3iA 656 13.65 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2qe8A 343 14.83 1f5mA 180 15.68 d.110.2.1 40895 1avgI 142 15.77 b.60.1.3 27229 1hw7A 255 15.91 d.193.1.1 61297 2bibA 547 16.88 b.109.1.1,d.157.1.8 128581,128582 2z14A 133 17.61 1k8kC 372 19.09 b.69.4.1 68308 2nv4A 147 19.98 1esoA 154 28.16 b.1.8.1 22293 1m2kA 249 29.19 c.31.1.5 84754 1ddzA 496 30.45 c.53.2.1,c.53.2.1 33372,33373 1r62A 160 30.57 d.122.1.3 104816 1i4uA 181 32.61 b.60.1.1 61732 1i12A 160 34.36 d.108.1.1 61515 1g5cA 170 35.45 c.53.2.1 60264 2aqmA 154 35.87 2gnpA 266 37.00 1jzuA 157 37.21 b.60.1.1 84271 2d28C 149 37.64 2a19A 175 40.03 2z3zA 706 41.64 1kb0A 677 43.58 a.3.1.6,b.70.1.1 68378,68379 2pw0A 397 50.73 2ia1A 178 52.96 2h0bA 184 53.14 1dm9A 133 53.78 d.66.1.3 39560 2j6aA 141 54.51 1csnA 298 54.74 d.144.1.7 41664 1g72A 573 56.59 b.70.1.1 27680 1jh3A 107 57.21 d.66.1.4 71661 1npeA 267 57.88 b.68.5.1 92032 2exnA 136 58.44 b.165.1.1 132562 1ekjA 221 58.50 c.53.2.1 33364 1gt1A 159 59.60 b.60.1.1 90515 2d27A 149 60.64 2podA 410 61.10 1ym3A 215 61.79 1s2dA 167 62.91 c.23.14.1 98377 1ixcA 294 63.13 a.4.5.37,c.94.1.1 83764,83765 1pc3A 350 66.50 c.94.1.1 104102 2ipuG 226 69.40 1r0mA 375 70.24 c.1.11.2,d.54.1.1 104747,104748 1i6aA 219 71.60 c.94.1.1 61827 1c4rA 182 72.61 b.29.1.4 24229 2j7qA 232 73.29 1ma3A 253 73.45 c.31.1.5 78883 1jv4A 162 73.69 b.60.1.1 67343 2j04A 588 74.19 1u7iA 136 74.20 d.32.1.7 107724 1epaA 164 74.51 b.60.1.1 27128 2dsxA 52 76.10 g.41.5.1 131699 1cmiA 85 78.11 d.39.1.1 38551 1jdqA 98 79.25 d.68.3.3 66559 1gcuA 295 80.72 c.2.1.3,d.81.1.4 30063,39978 1kxoA 184 81.60 b.60.1.1 84475 1ylkA 172 83.61 1jhfA 202 85.04 a.4.5.2,b.87.1.1 63057,63058 1rb9 53 86.25 2biiA 424 86.39 1bkb 136 86.80 1slqA 278 87.47 f.47.1.1 105719 2qsxA 218 87.52 1brfA 53 88.87 g.41.5.1 45236 2oizA 361 89.77