# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 1.84e-22 2ckfA 454 4.55e-22 1uliA 460 5.81e-22 b.33.1.2,d.129.3.3 107921,107922 2b1xA 470 9.59e-22 b.33.1.2,d.129.3.3 127675,127676 2de6A 392 1.01e-21 b.33.1.2,d.129.3.3 131415,131416 2bmoA 447 1.57e-21 b.33.1.2,d.129.3.3 128804,128805 1o7nA 449 5.93e-21 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 6.97e-21 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 1.69e-20 2e4qA 109 1.62e-17 1fqtA 112 1.89e-17 b.33.1.1 24441 2i7fA 108 5.38e-17 1vm9A 111 6.19e-17 b.33.1.1 108886 3c0dA 119 8.03e-17 1rfs 139 1.46e-16 1nykA 165 1.82e-16 b.33.1.1 86408 1rie 129 2.21e-16 1rfsA 139 2.66e-16 b.33.1.1 24434 2de6D 115 3.23e-16 1sjgA 112 3.51e-16 b.33.1.1 105647 2q3wA 111 4.65e-16 b.33.1.1 139813 1g8kB 133 9.81e-16 b.33.1.1 24435 1rieA 129 1.56e-15 b.33.1.1 24427 2nvgA 141 2.18e-15 2jo6A 113 3.80e-15 2nwfA 141 7.15e-14 2e74D 179 1.59e-13 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 2.42e-12 b.33.1.1 71745 1ppjE 196 4.80e-12 b.33.1.1,f.23.12.1 104260,104261 2hf1A 68 0.8529 1gof 639 1.097 1k8kC 372 2.864 b.69.4.1 68308 2jrrA 67 3.136 2jvmA 80 4.053 2ct7A 86 6.075 g.44.1.4 130791 2qe8A 343 6.711 1k3iA 656 8.871 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1f5mA 180 9.077 d.110.2.1 40895 2bibA 547 10.26 b.109.1.1,d.157.1.8 128581,128582 1nszA 347 11.59 b.30.5.4 80724 1ijqA 316 11.85 b.68.5.1,g.3.11.1 62506,62507 1el6A 219 14.26 d.182.1.1 42606 1avgI 142 17.09 b.60.1.3 27229 1m2kA 249 17.58 c.31.1.5 84754 2h8gA 267 19.17 1dm9A 133 21.51 d.66.1.3 39560 1ms9A 648 21.54 b.29.1.15,b.68.1.1 85088,85089 2oizA 361 21.91 2nv4A 147 23.57 2p4oA 306 27.66 2gnqA 336 27.90 2z3zA 706 32.29 1esoA 154 33.82 b.1.8.1 22293 2j7qA 232 33.87 1kb0A 677 35.16 a.3.1.6,b.70.1.1 68378,68379 2h14A 317 35.18 2dg5A 366 37.37 d.153.1.6 131500 1r77A 103 37.79 2gnpA 266 38.73 1ddzA 496 39.81 c.53.2.1,c.53.2.1 33372,33373 1ekjA 221 42.79 c.53.2.1 33364 2h0bA 184 43.04 2j6aA 141 43.45 1gotB 340 46.04 b.69.4.1 27648 2z14A 133 47.40 1r0mA 375 47.69 c.1.11.2,d.54.1.1 104747,104748 1a0rB 340 49.05 b.69.4.1 27658 1g5cA 170 49.36 c.53.2.1 60264 1hw7A 255 49.60 d.193.1.1 61297 2gc7A 386 55.44 b.69.2.1 134954 2aqmA 154 56.50 1csnA 298 58.18 d.144.1.7 41664 1g72A 573 58.23 b.70.1.1 27680 1ma3A 253 61.54 c.31.1.5 78883 2vjxA 846 64.75 3cngA 189 65.93 1i4uA 181 65.96 b.60.1.1 61732 1bj7A 156 68.32 b.60.1.1 27113 2ipuG 226 68.48 1bkb 136 70.33 1mdlA 359 70.39 c.1.11.2,d.54.1.1 29247,38891 2d28C 149 71.34 2qmcA 377 71.64 1slqA 278 72.65 f.47.1.1 105719 1pbyB 337 73.04 b.69.2.2 94422 1c4rA 182 73.61 b.29.1.4 24229 2j6gA 266 74.06 1u0kA 288 75.48 d.21.1.2,d.21.1.2 107547,107548 2ia1A 178 75.48 1b12A 248 75.63 b.87.1.2 28388 1r62A 160 77.43 d.122.1.3 104816 1jh3A 107 77.70 d.66.1.4 71661 2qyxA 238 77.74 1gt1A 159 78.08 b.60.1.1 90515 2hesX 330 78.09 2pw0A 397 79.30 2qsxA 218 80.24 2dsxA 52 80.45 g.41.5.1 131699 2pm7B 297 80.88 2podA 410 81.34 1xeoA 168 81.95 d.167.1.1 121913 2oo6A 409 82.83 2qxvA 361 82.85 2pywA 420 82.88 2a19A 175 83.87 1brfA 53 86.52 g.41.5.1 45236 1bq9A 54 86.77 g.41.5.1 45238 1ylkA 172 87.03 1cc8A 73 87.40 d.58.17.1 39343 1rb9 53 88.38 1p22A 435 89.59 a.158.1.1,b.69.4.1 87715,87716 2qgyA 391 89.60 2p9wA 334 89.60 1ec7A 446 89.66 c.1.11.2,d.54.1.1 29218,38862