# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 5.66e-24 1uliA 460 7.40e-24 b.33.1.2,d.129.3.3 107921,107922 2de6A 392 1.01e-23 b.33.1.2,d.129.3.3 131415,131416 2ckfA 454 1.20e-23 2b1xA 470 4.32e-23 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 4.33e-23 b.33.1.2,d.129.3.3 128804,128805 1o7nA 449 1.30e-22 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 1.59e-22 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 4.53e-22 1fqtA 112 1.95e-19 b.33.1.1 24441 2e4qA 109 3.08e-19 2i7fA 108 9.87e-19 3c0dA 119 1.55e-18 1vm9A 111 2.20e-18 b.33.1.1 108886 1rfsA 139 3.36e-18 b.33.1.1 24434 1rfs 139 4.37e-18 2de6D 115 7.14e-18 1rie 129 9.04e-18 2q3wA 111 1.19e-17 b.33.1.1 139813 1sjgA 112 1.24e-17 b.33.1.1 105647 1nykA 165 1.70e-17 b.33.1.1 86408 2jo6A 113 5.67e-17 1rieA 129 7.05e-17 b.33.1.1 24427 2nvgA 141 8.45e-17 1g8kB 133 1.43e-16 b.33.1.1 24435 2nwfA 141 1.48e-15 2e74D 179 2.61e-15 b.33.1.1,f.23.12.1 132049,132050 1ppjE 196 1.33e-13 b.33.1.1,f.23.12.1 104260,104261 1jm1A 204 3.79e-13 b.33.1.1 71745 2hf1A 68 0.2011 2p4oA 306 0.8238 2jrrA 67 1.025 2jvmA 80 1.170 1ijqA 316 1.348 b.68.5.1,g.3.11.1 62506,62507 1sy3A 184 1.805 b.60.1.1 106110 2ct7A 86 2.003 g.44.1.4 130791 1gof 639 2.177 1r77A 103 2.250 2bibA 547 3.189 b.109.1.1,d.157.1.8 128581,128582 1e1aA 314 3.687 b.68.6.1 59155 1g72A 573 3.793 b.70.1.1 27680 1kb0A 677 4.082 a.3.1.6,b.70.1.1 68378,68379 1nszA 347 4.325 b.30.5.4 80724 1k3iA 656 4.524 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2qe8A 343 4.898 1f5mA 180 4.928 d.110.2.1 40895 1el6A 219 6.144 d.182.1.1 42606 1qxmA 300 8.437 b.42.2.1,b.42.2.1 96533,96534 2z3zA 706 10.78 1k8kC 372 11.62 b.69.4.1 68308 1sqjA 789 12.87 b.69.13.1,b.69.13.1 105918,105919 1npeA 267 13.11 b.68.5.1 92032 1pjxA 314 13.29 b.68.6.1 104167 2dpfA 115 14.17 1hxnA 219 15.45 b.66.1.1 27529 2h14A 317 15.53 1q7fA 286 16.06 b.68.9.1 96036 2d1zA 436 16.15 2gnpA 266 16.42 2gnqA 336 16.71 3bdrA 190 18.85 2fp8A 322 18.99 1lcyA 325 19.45 b.36.1.4,b.47.1.1 73834,73835 1epaA 164 20.80 b.60.1.1 27128 3cngA 189 21.59 1avgI 142 22.31 b.60.1.3 27229 2aqmA 154 22.39 1c4rA 182 22.65 b.29.1.4 24229 1tjgH 237 23.52 b.1.1.1,b.1.1.2 112446,112447 1m2kA 249 24.41 c.31.1.5 84754 1rwiA 270 24.85 b.68.9.1 97987 1esoA 154 24.88 b.1.8.1 22293 2biiA 424 27.15 1lrwA 600 28.28 b.70.1.1 91111 2ipuG 226 29.39 1ddzA 496 29.54 c.53.2.1,c.53.2.1 33372,33373 1vpvA 300 29.56 c.119.1.1 113975 1gotB 340 30.07 b.69.4.1 27648 1r0mA 375 30.83 c.1.11.2,d.54.1.1 104747,104748 2h8gA 267 32.04 1b2pA 119 32.70 b.78.1.1 27998 2bcjB 340 33.27 b.69.4.1 128289 1nuiA 255 33.54 e.13.1.2,g.41.3.2 86194,86195 1t0qA 498 34.31 a.25.1.2 106220 2hqsA 415 34.73 b.68.4.1,c.51.2.1 136662,136663 1qksA 567 34.78 a.3.1.2,b.70.2.1 15951,27710 1yiqA 689 35.88 2h0bA 184 36.11 2dhoA 235 36.21 2ad6A 571 36.92 b.70.1.1 126568 1dm9A 133 37.56 d.66.1.3 39560 1e79D 482 37.95 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1c7nA 399 38.59 c.67.1.3 34413 2o99A 182 39.20 d.110.2.2 138952 2j6gA 266 39.85 1pbyB 337 40.90 b.69.2.2 94422 2ra6A 166 41.74 2gc7A 386 41.90 b.69.2.1 134954 1jpcA 109 41.97 b.78.1.1 27986 2hesX 330 43.55 2avwA 311 43.92 1xd5A 112 44.11 b.78.1.1 115155 2yzsA 315 44.21 2hu5A 582 45.65 b.69.7.2,c.69.1.33 136763,136764 1h75A 81 46.25 c.47.1.1 60716 1knmA 130 47.45 b.42.2.1 72781 1ma3A 253 47.85 c.31.1.5 78883 1w6sA 599 48.21 b.70.1.1 114284 2j7qA 232 49.00 2pceA 386 49.08 2j6aA 141 49.17 1i4uA 181 49.77 b.60.1.1 61732 1l0qA 391 49.91 b.1.3.1,b.69.2.3 77644,77645 2dg1A 333 50.85 b.68.6.1 131493 1m2tB 263 51.06 b.42.2.1,b.42.2.1 84762,84763 2ovrB 445 52.01 1gtmA 419 52.35 c.2.1.7,c.58.1.1 30223,33871 2p9wA 334 52.41 2iy2A 72 52.55 1jhfA 202 52.92 a.4.5.2,b.87.1.1 63057,63058 1trkA 680 53.43 c.36.1.10,c.36.1.6,c.48.1.1 31803,31804,33090 1ybyA 215 53.71 2oizA 361 54.29 2dsxA 52 55.43 g.41.5.1 131699 1g5cA 170 56.46 c.53.2.1 60264 2ch0A 133 56.97 1a0rB 340 57.45 b.69.4.1 27658 1sdjA 310 58.23 d.21.1.2,d.21.1.2 98807,98808 1jzuA 157 58.29 b.60.1.1 84271 2oajA 902 58.54 2bhuA 602 58.74 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 2rdxA 379 58.91 1jh3A 107 59.14 d.66.1.4 71661 1orcA 71 59.82 a.35.1.2 17054 1wfeA 86 60.83 g.80.1.1 114579 1p22A 435 60.86 a.158.1.1,b.69.4.1 87715,87716 1vqoU 66 61.04 g.39.1.6 120382 1rb9 53 61.26 2vjxA 846 61.56 1wgsA 133 65.34 b.34.13.3 114622 1ec7A 446 66.05 c.1.11.2,d.54.1.1 29218,38862 1tqzA 133 66.42 b.55.1.11 119327 1r9jA 673 66.62 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1h8gA 95 67.14 b.109.1.1 65735 1weeA 72 67.42 g.50.1.2 114550 1i6pA 220 67.91 c.53.2.1 61848 2r5fA 264 68.49 1a7iA 81 68.72 g.39.1.3,g.39.1.3 45143,45144 1q1aA 289 70.21 c.31.1.5 95561 1eupA 403 70.38 a.104.1.1 18967 2j97A 109 70.92 2pw0A 397 71.43 2ghsA 326 71.76 b.68.6.1 135209 1ym3A 215 72.52 2bbkH 355 73.83 b.69.2.1 27634 1itvA 195 73.93 b.66.1.1 76791 2aq5A 402 74.06 1odoA 408 76.59 a.104.1.1 92783 2v89A 82 77.17 2j7nA 1022 78.21 3buuA 229 79.23 2dg5A 366 79.64 d.153.1.6 131500 1r5mA 425 79.78 1vbkA 307 80.61 c.26.2.6,d.308.1.1 119957,119958 1z8oA 404 80.95 a.104.1.1 124722 3c5mA 396 81.64 1mdlA 359 81.75 c.1.11.2,d.54.1.1 29247,38891 1b12A 248 82.77 b.87.1.2 28388 1vprA 374 83.14 b.60.1.7 120066 1slqA 278 84.07 f.47.1.1 105719 1rb9A 52 84.10 g.41.5.1 45214 1x31C 206 84.78 1jm6A 407 86.19 a.29.5.1,d.122.1.4 66876,66877 1yeyA 444 87.12 c.1.11.2,d.54.1.1 116664,116665 2zc8A 369 87.15 1jipA 403 87.16 a.104.1.1 66748 1ekjA 221 87.71 c.53.2.1 33364 1y8tA 324 87.93 b.36.1.4,b.47.1.1 122763,122764 1iroA 54 87.95 g.41.5.1 45223 1yc5A 246 88.10 c.31.1.5 122910 1rj8A 164 88.13 b.22.1.1 97547 1y08A 323 88.83 d.3.1.12 116280 2o62A 270 88.96 2agyA 361 89.78