# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 2.17e-21 1uliA 460 2.89e-21 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 4.25e-21 2b1xA 470 9.54e-21 b.33.1.2,d.129.3.3 127675,127676 2de6A 392 1.11e-20 b.33.1.2,d.129.3.3 131415,131416 2bmoA 447 1.54e-20 b.33.1.2,d.129.3.3 128804,128805 1o7nA 449 3.92e-20 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 4.91e-20 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 2.17e-19 1fqtA 112 5.68e-17 b.33.1.1 24441 2e4qA 109 1.50e-16 1vm9A 111 2.55e-16 b.33.1.1 108886 1rfs 139 3.30e-16 3c0dA 119 3.52e-16 2i7fA 108 3.70e-16 1rfsA 139 4.71e-16 b.33.1.1 24434 1nykA 165 5.40e-16 b.33.1.1 86408 2de6D 115 8.65e-16 1rie 129 1.20e-15 1sjgA 112 1.23e-15 b.33.1.1 105647 2q3wA 111 3.19e-15 b.33.1.1 139813 2jo6A 113 7.51e-15 2nvgA 141 8.23e-15 1rieA 129 1.00e-14 b.33.1.1 24427 1g8kB 133 1.02e-14 b.33.1.1 24435 2nwfA 141 1.82e-13 2e74D 179 5.76e-13 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 1.03e-11 b.33.1.1 71745 1ppjE 196 1.27e-11 b.33.1.1,f.23.12.1 104260,104261 2hf1A 68 1.678 1ijqA 316 2.376 b.68.5.1,g.3.11.1 62506,62507 2p4oA 306 3.089 1gof 639 3.470 2jvmA 80 4.556 1f5mA 180 4.756 d.110.2.1 40895 1sy3A 184 6.026 b.60.1.1 106110 1nszA 347 7.781 b.30.5.4 80724 2jrrA 67 8.417 2bibA 547 10.83 b.109.1.1,d.157.1.8 128581,128582 1el6A 219 11.84 d.182.1.1 42606 1i4uA 181 12.30 b.60.1.1 61732 2h8gA 267 13.45 2qe8A 343 15.05 1xd5A 112 18.96 b.78.1.1 115155 1k8kC 372 19.62 b.69.4.1 68308 2j7qA 232 19.78 2dpfA 115 21.43 1avgI 142 22.85 b.60.1.3 27229 1r77A 103 22.89 2oizA 361 25.74 1hxnA 219 27.59 b.66.1.1 27529 1npeA 267 29.19 b.68.5.1 92032 1jpcA 109 30.38 b.78.1.1 27986 1k3iA 656 31.20 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1j3mA 129 33.94 d.129.7.1 103836 1c4rA 182 33.98 b.29.1.4 24229 2h0bA 184 35.31 1b2pA 119 40.08 b.78.1.1 27998 2ct7A 86 41.36 g.44.1.4 130791 1hw7A 255 43.06 d.193.1.1 61297 1dm9A 133 43.91 d.66.1.3 39560 1g72A 573 45.13 b.70.1.1 27680 1h75A 81 45.21 c.47.1.1 60716 2podA 410 46.17 1jzuA 157 46.31 b.60.1.1 84271 2z3zA 706 46.65 2dhoA 235 47.45 2gnpA 266 47.76 1s2dA 167 47.80 c.23.14.1 98377 1kb0A 677 48.61 a.3.1.6,b.70.1.1 68378,68379 1epaA 164 50.32 b.60.1.1 27128 2d28C 149 50.97 1vr8A 142 55.70 d.312.1.1 120445 1ddzA 496 56.79 c.53.2.1,c.53.2.1 33372,33373 1r0mA 375 56.89 c.1.11.2,d.54.1.1 104747,104748 2biiA 424 56.91 1jh3A 107 56.92 d.66.1.4 71661 1jm6A 407 57.03 a.29.5.1,d.122.1.4 66876,66877 1qxmA 300 57.36 b.42.2.1,b.42.2.1 96533,96534 1xeoA 168 57.40 d.167.1.1 121913 2nv4A 147 61.67 1bj7A 156 62.70 b.60.1.1 27113 1m2kA 249 62.88 c.31.1.5 84754 1r62A 160 64.23 d.122.1.3 104816 2aujD 309 66.63 1ec7A 446 69.04 c.1.11.2,d.54.1.1 29218,38862 1jv4A 162 69.67 b.60.1.1 67343 1mdlA 359 70.16 c.1.11.2,d.54.1.1 29247,38891 1gt1A 159 70.66 b.60.1.1 90515 1e1aA 314 71.13 b.68.6.1 59155 1jhfA 202 72.58 a.4.5.2,b.87.1.1 63057,63058 1cmiA 85 72.62 d.39.1.1 38551 2rdxA 379 73.69 1q7fA 286 80.27 b.68.9.1 96036 1pjxA 314 80.62 b.68.6.1 104167 1qy1A 174 81.43 b.60.1.1 96568 1g5cA 170 82.54 c.53.2.1 60264 1sdjA 310 88.60 d.21.1.2,d.21.1.2 98807,98808 1rwiA 270 88.69 b.68.9.1 97987 2r41A 110 88.73 2ghsA 326 88.87 b.68.6.1 135209