# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 2.02e-21 1uliA 460 2.78e-21 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 3.98e-21 2b1xA 470 8.96e-21 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 1.19e-20 b.33.1.2,d.129.3.3 128804,128805 2de6A 392 1.50e-20 b.33.1.2,d.129.3.3 131415,131416 1o7nA 449 3.30e-20 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 4.10e-20 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 2.94e-19 1fqtA 112 8.55e-17 b.33.1.1 24441 2e4qA 109 1.62e-16 1rfs 139 2.38e-16 1vm9A 111 2.69e-16 b.33.1.1 108886 1rie 129 3.18e-16 1nykA 165 3.70e-16 b.33.1.1 86408 2i7fA 108 3.95e-16 1rfsA 139 4.14e-16 b.33.1.1 24434 3c0dA 119 5.52e-16 2de6D 115 9.74e-16 1sjgA 112 1.36e-15 b.33.1.1 105647 2q3wA 111 2.31e-15 b.33.1.1 139813 1g8kB 133 2.52e-15 b.33.1.1 24435 1rieA 129 2.76e-15 b.33.1.1 24427 2nvgA 141 3.07e-15 2jo6A 113 1.03e-14 2nwfA 141 5.96e-14 2e74D 179 2.34e-13 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 3.53e-12 b.33.1.1 71745 1ppjE 196 5.22e-12 b.33.1.1,f.23.12.1 104260,104261 2hf1A 68 1.824 2jvmA 80 3.196 1f5mA 180 3.997 d.110.2.1 40895 1gof 639 4.660 1ijqA 316 5.961 b.68.5.1,g.3.11.1 62506,62507 2jrrA 67 7.712 2p4oA 306 7.854 1sy3A 184 9.606 b.60.1.1 106110 2bibA 547 12.56 b.109.1.1,d.157.1.8 128581,128582 1el6A 219 12.85 d.182.1.1 42606 1i4uA 181 13.14 b.60.1.1 61732 2qe8A 343 14.18 1avgI 142 17.05 b.60.1.3 27229 2h8gA 267 18.03 1jzuA 157 23.42 b.60.1.1 84271 1nszA 347 23.99 b.30.5.4 80724 1s2dA 167 27.38 c.23.14.1 98377 1r62A 160 28.62 d.122.1.3 104816 2ct7A 86 30.46 g.44.1.4 130791 1k8kC 372 32.02 b.69.4.1 68308 1hxnA 219 33.59 b.66.1.1 27529 1epaA 164 35.92 b.60.1.1 27128 2oizA 361 37.24 1xd5A 112 37.47 b.78.1.1 115155 1k3iA 656 39.15 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2dhoA 235 42.20 1jhfA 202 43.01 a.4.5.2,b.87.1.1 63057,63058 1c4rA 182 43.93 b.29.1.4 24229 1bj7A 156 44.70 b.60.1.1 27113 1m2kA 249 46.68 c.31.1.5 84754 1v87A 114 47.27 g.44.1.1 108422 1jv4A 162 47.56 b.60.1.1 67343 2dpfA 115 48.10 2nv4A 147 49.53 1r0mA 375 50.27 c.1.11.2,d.54.1.1 104747,104748 3bdrA 190 54.37 1h4uA 265 54.84 d.22.1.2,g.3.11.5 60622,60623 1dm9A 133 55.62 d.66.1.3 39560 1mup 166 56.50 1gt1A 159 56.59 b.60.1.1 90515 2biiA 424 57.18 1hw7A 255 58.47 d.193.1.1 61297 2gnpA 266 58.59 1r77A 103 59.44 2agyA 361 60.62 1kxoA 184 61.63 b.60.1.1 84475 1j3mA 129 62.38 d.129.7.1 103836 1qy1A 174 62.45 b.60.1.1 96568 1xeoA 168 62.97 d.167.1.1 121913 1jh3A 107 63.23 d.66.1.4 71661 1zndA 174 63.61 b.60.1.1 125380 1esoA 154 66.15 b.1.8.1 22293 1ddzA 496 66.92 c.53.2.1,c.53.2.1 33372,33373 2ghsA 326 66.96 b.68.6.1 135209 2ia1A 178 67.21 2aqmA 154 69.34 2jz8A 87 69.50 2cztA 167 73.05 2aq5A 402 73.49 1ec7A 446 74.77 c.1.11.2,d.54.1.1 29218,38862 2ipuG 226 75.59 1b12A 248 77.05 b.87.1.2 28388 2podA 410 78.73 1h75A 81 81.54 c.47.1.1 60716 1mdlA 359 83.68 c.1.11.2,d.54.1.1 29247,38891 1jpcA 109 87.32 b.78.1.1 27986 1i06A 180 87.94 b.60.1.1 27131 1g72A 573 88.85 b.70.1.1 27680