# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 9.40e-21 1uliA 460 1.43e-20 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 1.74e-20 2b1xA 470 4.24e-20 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 5.61e-20 b.33.1.2,d.129.3.3 128804,128805 2de6A 392 6.58e-20 b.33.1.2,d.129.3.3 131415,131416 1o7nA 449 1.54e-19 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 1.88e-19 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 1.24e-18 1fqtA 112 3.21e-16 b.33.1.1 24441 2e4qA 109 5.04e-16 1rfs 139 6.63e-16 1vm9A 111 7.89e-16 b.33.1.1 108886 1rfsA 139 1.22e-15 b.33.1.1 24434 1rie 129 1.25e-15 1nykA 165 1.25e-15 b.33.1.1 86408 2i7fA 108 1.37e-15 3c0dA 119 1.74e-15 2de6D 115 2.96e-15 1sjgA 112 3.33e-15 b.33.1.1 105647 2q3wA 111 6.23e-15 b.33.1.1 139813 1rieA 129 9.82e-15 b.33.1.1 24427 1g8kB 133 1.07e-14 b.33.1.1 24435 2nvgA 141 1.23e-14 2jo6A 113 2.82e-14 2nwfA 141 2.22e-13 2e74D 179 7.35e-13 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 7.72e-12 b.33.1.1 71745 1ppjE 196 1.16e-11 b.33.1.1,f.23.12.1 104260,104261 2hf1A 68 1.850 2jvmA 80 3.475 1gof 639 4.067 1f5mA 180 4.209 d.110.2.1 40895 1ijqA 316 4.771 b.68.5.1,g.3.11.1 62506,62507 2p4oA 306 6.573 2jrrA 67 6.870 1sy3A 184 9.284 b.60.1.1 106110 1i4uA 181 13.03 b.60.1.1 61732 2bibA 547 13.39 b.109.1.1,d.157.1.8 128581,128582 2h8gA 267 16.46 1el6A 219 18.08 d.182.1.1 42606 1nszA 347 18.67 b.30.5.4 80724 2qe8A 343 19.75 2ct7A 86 22.18 g.44.1.4 130791 1avgI 142 23.12 b.60.1.3 27229 1jzuA 157 27.80 b.60.1.1 84271 1s2dA 167 32.11 c.23.14.1 98377 1r62A 160 33.28 d.122.1.3 104816 1k8kC 372 34.33 b.69.4.1 68308 1hw7A 255 35.64 d.193.1.1 61297 1m2kA 249 39.72 c.31.1.5 84754 1hxnA 219 39.87 b.66.1.1 27529 1v87A 114 40.23 g.44.1.1 108422 1k3iA 656 40.73 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2oizA 361 42.35 2aqmA 154 44.85 2gnpA 266 44.85 1xd5A 112 45.96 b.78.1.1 115155 2biiA 424 46.55 1epaA 164 47.16 b.60.1.1 27128 2dhoA 235 47.72 1bj7A 156 47.75 b.60.1.1 27113 1dm9A 133 50.23 d.66.1.3 39560 1jhfA 202 50.89 a.4.5.2,b.87.1.1 63057,63058 1ddzA 496 51.61 c.53.2.1,c.53.2.1 33372,33373 2ia1A 178 51.80 2nv4A 147 52.41 1c4rA 182 53.84 b.29.1.4 24229 1r0mA 375 55.27 c.1.11.2,d.54.1.1 104747,104748 1esoA 154 57.25 b.1.8.1 22293 1xeoA 168 57.56 d.167.1.1 121913 1kxoA 184 59.71 b.60.1.1 84475 2jz8A 87 60.23 2agyA 361 62.20 1jv4A 162 62.48 b.60.1.1 67343 2dpfA 115 65.02 2ipuG 226 69.44 1r77A 103 70.65 1mup 166 70.79 1gt1A 159 70.85 b.60.1.1 90515 1h4uA 265 71.70 d.22.1.2,g.3.11.5 60622,60623 1j3mA 129 73.64 d.129.7.1 103836 1ec7A 446 75.44 c.1.11.2,d.54.1.1 29218,38862 1jh3A 107 76.45 d.66.1.4 71661 1h75A 81 77.12 c.47.1.1 60716 1tjgH 237 79.69 b.1.1.1,b.1.1.2 112446,112447 1i12A 160 79.80 d.108.1.1 61515 1g72A 573 80.42 b.70.1.1 27680 1g5cA 170 81.30 c.53.2.1 60264 1qy1A 174 84.12 b.60.1.1 96568 2j7qA 232 85.50 2aq5A 402 86.46 1zndA 174 87.44 b.60.1.1 125380 2cztA 167 88.81 1bebA 162 89.29 b.60.1.1 27115 2z3zA 706 89.83 1qxmA 300 89.90 b.42.2.1,b.42.2.1 96533,96534