# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 2.02e-22 1uliA 460 2.90e-22 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 3.78e-22 2b1xA 470 1.08e-21 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 1.99e-21 b.33.1.2,d.129.3.3 128804,128805 2de6A 392 3.00e-21 b.33.1.2,d.129.3.3 131415,131416 1o7nA 449 3.88e-21 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 4.28e-21 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 1.63e-19 1fqtA 112 1.70e-17 b.33.1.1 24441 3c0dA 119 3.26e-17 2e4qA 109 3.68e-17 1vm9A 111 5.68e-17 b.33.1.1 108886 2i7fA 108 6.13e-17 1sjgA 112 9.54e-17 b.33.1.1 105647 1rfs 139 1.43e-16 2q3wA 111 2.00e-16 b.33.1.1 139813 2de6D 115 2.01e-16 1rfsA 139 2.04e-16 b.33.1.1 24434 1rie 129 2.64e-16 2jo6A 113 4.08e-16 1nykA 165 2.10e-15 b.33.1.1 86408 1rieA 129 2.52e-15 b.33.1.1 24427 1g8kB 133 4.04e-15 b.33.1.1 24435 2nvgA 141 1.92e-14 2e74D 179 3.11e-14 b.33.1.1,f.23.12.1 132049,132050 2nwfA 141 1.71e-13 1ppjE 196 1.07e-11 b.33.1.1,f.23.12.1 104260,104261 1jm1A 204 4.40e-11 b.33.1.1 71745 1ijqA 316 5.663 b.68.5.1,g.3.11.1 62506,62507 2hf1A 68 6.841 1nszA 347 10.27 b.30.5.4 80724 2ct7A 86 14.72 g.44.1.4 130791 1s2dA 167 14.96 c.23.14.1 98377 1x1mA 107 17.44 d.15.1.1 121592 1f5mA 180 18.88 d.110.2.1 40895 2jrrA 67 21.43 1ddzA 496 28.02 c.53.2.1,c.53.2.1 33372,33373 2jvmA 80 29.13 2dg5A 366 29.45 d.153.1.6 131500 1el6A 219 33.31 d.182.1.1 42606 1xeoA 168 35.73 d.167.1.1 121913 1i4uA 181 39.42 b.60.1.1 61732 2bbkH 355 44.26 b.69.2.1 27634 1cc8A 73 45.14 d.58.17.1 39343 1erw 105 46.16 2ipuG 226 47.51 1aiu 105 47.66 2avwA 311 48.13 2nqoA 376 49.42 d.153.1.6 138473 1gof 639 49.97 2yzkA 178 51.67 2h8gA 267 53.84 1erv 105 54.80 1epaA 164 57.20 b.60.1.1 27128 1f8yA 157 58.14 c.23.14.1 31395 2qmcA 377 59.83 1k3iA 656 62.56 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2hrdA 253 69.40 1r77A 103 70.96 2b4wA 315 71.58 b.67.2.5 127866 1jv4A 162 72.62 b.60.1.1 67343 2v89A 82 73.00 2z0rA 103 74.44 1g60A 260 75.64 c.66.1.11 70151 2j7qA 232 76.09 1ym3A 215 77.08 1f9mA 112 81.31 c.47.1.1 32736 2podA 410 81.83 2i8aA 252 82.99 1ou0A 207 84.98 c.23.17.1 93536 2bibA 547 85.94 b.109.1.1,d.157.1.8 128581,128582 1y08A 323 88.98 d.3.1.12 116280