# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 6.96e-21 1uliA 460 9.74e-21 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 1.31e-20 2b1xA 470 2.88e-20 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 4.31e-20 b.33.1.2,d.129.3.3 128804,128805 2de6A 392 6.33e-20 b.33.1.2,d.129.3.3 131415,131416 1o7nA 449 9.85e-20 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 1.20e-19 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 6.21e-19 1fqtA 112 1.48e-16 b.33.1.1 24441 2e4qA 109 2.03e-16 1vm9A 111 4.58e-16 b.33.1.1 108886 2i7fA 108 5.79e-16 3c0dA 119 6.64e-16 1sjgA 112 1.03e-15 b.33.1.1 105647 1rfs 139 1.15e-15 1rie 129 1.30e-15 2de6D 115 1.36e-15 1rfsA 139 1.42e-15 b.33.1.1 24434 1nykA 165 1.92e-15 b.33.1.1 86408 2q3wA 111 4.14e-15 b.33.1.1 139813 1rieA 129 9.85e-15 b.33.1.1 24427 2nvgA 141 1.09e-14 2jo6A 113 1.31e-14 1g8kB 133 1.63e-14 b.33.1.1 24435 2nwfA 141 1.50e-13 2e74D 179 1.32e-12 b.33.1.1,f.23.12.1 132049,132050 1ppjE 196 1.57e-11 b.33.1.1,f.23.12.1 104260,104261 1jm1A 204 1.82e-11 b.33.1.1 71745 1gof 639 0.7659 2hf1A 68 1.851 1ijqA 316 1.873 b.68.5.1,g.3.11.1 62506,62507 2p4oA 306 2.735 1nszA 347 2.745 b.30.5.4 80724 1sy3A 184 2.762 b.60.1.1 106110 2jvmA 80 6.884 1f5mA 180 8.614 d.110.2.1 40895 1el6A 219 9.905 d.182.1.1 42606 2qe8A 343 10.21 1k3iA 656 11.08 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2jrrA 67 11.18 1g72A 573 12.15 b.70.1.1 27680 2bibA 547 12.60 b.109.1.1,d.157.1.8 128581,128582 2h8gA 267 12.63 1i4uA 181 14.16 b.60.1.1 61732 1k8kC 372 15.11 b.69.4.1 68308 2j7qA 232 16.33 2dpfA 115 17.94 2ct7A 86 19.22 g.44.1.4 130791 1kb0A 677 19.31 a.3.1.6,b.70.1.1 68378,68379 1r77A 103 21.84 1avgI 142 25.19 b.60.1.3 27229 1qxmA 300 25.69 b.42.2.1,b.42.2.1 96533,96534 1jpcA 109 29.75 b.78.1.1 27986 1e1aA 314 31.63 b.68.6.1 59155 1xd5A 112 31.68 b.78.1.1 115155 1gt1A 159 34.41 b.60.1.1 90515 1bj7A 156 34.59 b.60.1.1 27113 2h0bA 184 35.33 1s2dA 167 37.22 c.23.14.1 98377 2nv4A 147 40.81 2dhoA 235 40.94 1m2kA 249 41.69 c.31.1.5 84754 2z3zA 706 41.98 1dm9A 133 43.42 d.66.1.3 39560 2biiA 424 45.24 1g5cA 170 45.58 c.53.2.1 60264 1epaA 164 45.69 b.60.1.1 27128 1q7fA 286 46.82 b.68.9.1 96036 1h75A 81 48.34 c.47.1.1 60716 1hw7A 255 49.28 d.193.1.1 61297 1npeA 267 49.66 b.68.5.1 92032 1b2pA 119 49.75 b.78.1.1 27998 1jzuA 157 50.31 b.60.1.1 84271 2gc7A 386 50.64 b.69.2.1 134954 1ddzA 496 51.11 c.53.2.1,c.53.2.1 33372,33373 2hqsA 415 51.17 b.68.4.1,c.51.2.1 136662,136663 1lrwA 600 51.38 b.70.1.1 91111 2gnpA 266 53.52 1jm6A 407 53.89 a.29.5.1,d.122.1.4 66876,66877 2nvmA 126 54.23 d.326.1.1 138631 2ra6A 166 54.95 1hxnA 219 55.86 b.66.1.1 27529 2oizA 361 56.17 1r62A 160 57.48 d.122.1.3 104816 1jh3A 107 60.00 d.66.1.4 71661 2a6sA 84 62.67 d.298.1.1 126305 2d28C 149 64.65 2h14A 317 65.22 2gnqA 336 68.67 1cmiA 85 69.52 d.39.1.1 38551 1jv4A 162 71.59 b.60.1.1 67343 1lcyA 325 72.38 b.36.1.4,b.47.1.1 73834,73835 1i6aA 219 73.62 c.94.1.1 61827 1gotB 340 74.60 b.69.4.1 27648 2o99A 182 74.69 d.110.2.2 138952 2bbkH 355 75.55 b.69.2.1 27634 1jhfA 202 77.91 a.4.5.2,b.87.1.1 63057,63058 2avwA 311 79.27 1qlpA 394 80.19 e.1.1.1 42628 1ylkA 172 80.96 2ad6A 571 80.97 b.70.1.1 126568 2j6aA 141 81.02 2ghsA 326 81.45 b.68.6.1 135209 1j3mA 129 83.12 d.129.7.1 103836 1qy1A 174 83.22 b.60.1.1 96568 2hesX 330 83.67 2podA 410 84.17 1c4rA 182 86.17 b.29.1.4 24229 1ekjA 221 86.44 c.53.2.1 33364 2dg5A 366 87.59 d.153.1.6 131500 2ipuG 226 88.19 2ia1A 178 88.80 2iy2A 72 89.34