# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1uliA 460 9.74e-19 b.33.1.2,d.129.3.3 107921,107922 2gbwA 454 1.86e-18 2b1xA 470 3.00e-18 b.33.1.2,d.129.3.3 127675,127676 2ckfA 454 4.10e-18 2bmoA 447 4.43e-18 b.33.1.2,d.129.3.3 128804,128805 2de6A 392 1.14e-17 b.33.1.2,d.129.3.3 131415,131416 1eg9A 449 1.15e-17 b.33.1.2,d.129.3.3 24443,41322 1o7nA 449 1.79e-17 b.33.1.2,d.129.3.3 81162,81163 1z02A 446 1.77e-16 1fqtA 112 1.10e-14 b.33.1.1 24441 2e4qA 109 1.73e-14 1rie 129 2.27e-14 2i7fA 108 3.04e-14 1vm9A 111 3.33e-14 b.33.1.1 108886 3c0dA 119 3.93e-14 1rfs 139 4.02e-14 1rfsA 139 4.69e-14 b.33.1.1 24434 1nykA 165 5.17e-14 b.33.1.1 86408 1sjgA 112 9.44e-14 b.33.1.1 105647 2de6D 115 9.82e-14 1rieA 129 1.51e-13 b.33.1.1 24427 2q3wA 111 1.87e-13 b.33.1.1 139813 1g8kB 133 2.11e-13 b.33.1.1 24435 2nvgA 141 2.50e-13 2jo6A 113 5.36e-13 2nwfA 141 2.17e-12 2e74D 179 1.21e-11 b.33.1.1,f.23.12.1 132049,132050 1ppjE 196 1.47e-10 b.33.1.1,f.23.12.1 104260,104261 1jm1A 204 1.69e-10 b.33.1.1 71745 1ijqA 316 4.443 b.68.5.1,g.3.11.1 62506,62507 1k3iA 656 5.097 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2hf1A 68 5.919 1nr0A 611 6.935 b.69.4.1,b.69.4.1 86078,86079 2bibA 547 7.503 b.109.1.1,d.157.1.8 128581,128582 2jvmA 80 8.329 1qxmA 300 9.001 b.42.2.1,b.42.2.1 96533,96534 1yrzA 528 9.490 b.29.1.23,b.67.2.1 123948,123949 2dpfA 115 11.55 1i6aA 219 12.72 c.94.1.1 61827 1gt1A 159 13.94 b.60.1.1 90515 1nszA 347 14.58 b.30.5.4 80724 1d3cA 686 14.67 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1gof 639 16.66 2jrrA 67 17.02 2ct7A 86 17.09 g.44.1.4 130791 1f5mA 180 17.28 d.110.2.1 40895 1esoA 154 17.37 b.1.8.1 22293 1r62A 160 17.81 d.122.1.3 104816 2h8gA 267 19.87 2nutA 769 20.23 1qo8A 566 20.71 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2bbkH 355 20.79 b.69.2.1 27634 2gc7A 386 21.56 b.69.2.1 134954 1ri6A 343 23.52 b.69.11.1 97503 1pz7A 204 23.65 b.29.1.4 95405 1k8kC 372 23.92 b.69.4.1 68308 2qe8A 343 25.61 1evlA 401 25.98 c.51.1.1,d.104.1.1 33202,40751 1h8eA 510 26.41 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2gnpA 266 27.45 1mzyA 333 28.92 b.6.1.3,b.6.1.3 103848,103849 1avgI 142 28.93 b.60.1.3 27229 1p22A 435 29.20 a.158.1.1,b.69.4.1 87715,87716 1gtmA 419 29.64 c.2.1.7,c.58.1.1 30223,33871 3clqA 421 30.80 1bj7A 156 32.06 b.60.1.1 27113 1i4uA 181 32.30 b.60.1.1 61732 1xd5A 112 33.42 b.78.1.1 115155 1el6A 219 33.79 d.182.1.1 42606 2qxvA 361 34.30 2dhoA 235 34.54 1hw7A 255 34.73 d.193.1.1 61297 1jzuA 157 35.66 b.60.1.1 84271 1ea9C 583 35.67 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1w0pA 781 35.85 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1vheA 373 36.13 b.49.3.1,c.56.5.4 100669,100670 2aqmA 154 36.44 1gotB 340 36.52 b.69.4.1 27648 2eh6A 375 36.53 2p17A 277 36.88 2cztA 167 37.62 1c4rA 182 38.56 b.29.1.4 24229 2p8bA 369 40.06 1pjxA 314 40.09 b.68.6.1 104167 1a0rB 340 41.33 b.69.4.1 27658 1obpA 159 42.66 b.60.1.1 27092 2htuA 390 46.62 1pjr 724 46.66 1yf3A 259 48.10 c.66.1.28 123046 3bdrA 190 48.99 1y8tA 324 49.04 b.36.1.4,b.47.1.1 122763,122764 1jmxB 349 49.71 b.69.2.2 66906 1lp3A 519 49.92 b.121.5.2 74169 1jpcA 109 50.85 b.78.1.1 27986 1j31A 262 51.63 d.160.1.2 90808 1mqoA 227 52.15 d.157.1.1 103846 2oizA 361 52.43 1iyeA 309 52.72 e.17.1.1 83786 1uz8B 212 52.83 b.1.1.1,b.1.1.2 108168,108169 1db3A 372 52.85 c.2.1.2 29813 1r0mA 375 52.97 c.1.11.2,d.54.1.1 104747,104748 2p4oA 306 53.27 3sil 379 53.49 2yzsA 315 55.30 1kqfB 294 55.61 d.58.1.5,f.23.22.1 75900,75901 1flcA 432 55.86 b.19.1.3,c.23.10.2 23837,31337 2ouxA 286 56.44 2bfgA 503 56.93 b.71.1.2,c.1.8.3 128423,128424 1b2pA 119 57.27 b.78.1.1 27998 1m2tB 263 57.54 b.42.2.1,b.42.2.1 84762,84763 2vccA 891 57.95 1lcyA 325 60.64 b.36.1.4,b.47.1.1 73834,73835 1r77A 103 62.37 1jhfA 202 62.62 a.4.5.2,b.87.1.1 63057,63058 2h0bA 184 62.63 2atfA 200 63.50 b.82.1.19 127290 3cngA 189 64.27 3bt3A 148 64.72 1o70A 324 64.74 b.118.1.1,b.118.1.1 81115,81116 2nycA 144 65.88 d.37.1.1 138812 2jz8A 87 68.38 1me8A 503 68.67 c.1.5.1 79028 1b65A 375 69.23 d.154.1.1 42020 1hbq 183 70.75 1q33A 292 72.68 d.113.1.1 95657 2qyxA 238 73.62 1mxgA 435 73.67 b.71.1.1,c.1.8.1 85193,85194 1e79D 482 74.66 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 2jhnA 295 74.81 1h09A 338 76.22 b.109.1.1,c.1.8.8 83420,83421 2ra6A 166 76.39 1c8uA 285 77.77 d.38.1.3,d.38.1.3 38547,38548 2qf7A 1165 77.77 2i3oA 516 78.04 d.153.1.6 137027 2qfeA 148 79.23 1pbyB 337 80.72 b.69.2.2 94422 2qflA 267 80.84 1i06A 180 82.66 b.60.1.1 27131 1mc0A 368 82.89 d.110.2.1,d.110.2.1 78937,78938 1t5oA 351 83.82 c.124.1.5 106459 1x1mA 107 85.46 d.15.1.1 121592 2qsxA 218 87.19 2gupA 292 88.48 c.55.1.10,c.55.1.10 135744,135745 2vduB 450 89.70 3buuA 229 89.85