# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 1.74e-21 1uliA 460 2.75e-21 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 3.14e-21 2b1xA 470 7.10e-21 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 1.00e-20 b.33.1.2,d.129.3.3 128804,128805 2de6A 392 1.22e-20 b.33.1.2,d.129.3.3 131415,131416 1o7nA 449 2.68e-20 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 3.58e-20 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 1.84e-19 1fqtA 112 9.64e-17 b.33.1.1 24441 2e4qA 109 1.46e-16 1rie 129 1.93e-16 1vm9A 111 2.32e-16 b.33.1.1 108886 2i7fA 108 2.65e-16 1rfs 139 2.76e-16 3c0dA 119 3.66e-16 1rfsA 139 4.01e-16 b.33.1.1 24434 1nykA 165 4.15e-16 b.33.1.1 86408 1sjgA 112 7.91e-16 b.33.1.1 105647 2de6D 115 9.05e-16 1rieA 129 1.54e-15 b.33.1.1 24427 2nvgA 141 1.78e-15 2q3wA 111 2.00e-15 b.33.1.1 139813 1g8kB 133 2.33e-15 b.33.1.1 24435 2jo6A 113 9.21e-15 2nwfA 141 2.88e-14 2e74D 179 2.41e-13 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 3.38e-12 b.33.1.1 71745 1ppjE 196 3.96e-12 b.33.1.1,f.23.12.1 104260,104261 1gof 639 1.311 2hf1A 68 2.064 2jvmA 80 3.401 1ijqA 316 4.335 b.68.5.1,g.3.11.1 62506,62507 1nszA 347 6.464 b.30.5.4 80724 1f5mA 180 8.065 d.110.2.1 40895 2bibA 547 8.565 b.109.1.1,d.157.1.8 128581,128582 2jrrA 67 8.695 1el6A 219 9.428 d.182.1.1 42606 2p4oA 306 11.04 1sy3A 184 12.74 b.60.1.1 106110 1i4uA 181 13.78 b.60.1.1 61732 2h8gA 267 15.50 2ct7A 86 16.75 g.44.1.4 130791 1bj7A 156 16.98 b.60.1.1 27113 2qe8A 343 18.42 1avgI 142 19.84 b.60.1.3 27229 1k3iA 656 20.90 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1g72A 573 23.33 b.70.1.1 27680 2biiA 424 23.49 1k8kC 372 27.48 b.69.4.1 68308 1m2kA 249 30.44 c.31.1.5 84754 1jzuA 157 31.88 b.60.1.1 84271 1qxmA 300 32.66 b.42.2.1,b.42.2.1 96533,96534 1hw7A 255 35.16 d.193.1.1 61297 2dhoA 235 35.16 1i6aA 219 35.31 c.94.1.1 61827 1kb0A 677 35.58 a.3.1.6,b.70.1.1 68378,68379 1s2dA 167 38.25 c.23.14.1 98377 2dpfA 115 39.91 1r62A 160 42.63 d.122.1.3 104816 1c4rA 182 42.97 b.29.1.4 24229 1xeoA 168 43.60 d.167.1.1 121913 1lcyA 325 46.73 b.36.1.4,b.47.1.1 73834,73835 2nv4A 147 47.11 1dm9A 133 48.45 d.66.1.3 39560 2gnpA 266 48.91 1r77A 103 49.26 1hxnA 219 51.93 b.66.1.1 27529 2h0bA 184 56.58 1ddzA 496 57.36 c.53.2.1,c.53.2.1 33372,33373 2aq5A 402 57.85 1xd5A 112 60.23 b.78.1.1 115155 1h75A 81 60.35 c.47.1.1 60716 1v87A 114 61.95 g.44.1.1 108422 2j7qA 232 62.02 1jpcA 109 62.08 b.78.1.1 27986 1g5cA 170 63.04 c.53.2.1 60264 1jh3A 107 63.60 d.66.1.4 71661 2cztA 167 66.38 1gt1A 159 66.99 b.60.1.1 90515 2jz8A 87 68.74 1ixcA 294 69.21 a.4.5.37,c.94.1.1 83764,83765 2ipuG 226 69.89 1pz7A 204 71.92 b.29.1.4 95405 1kxoA 184 73.99 b.60.1.1 84475 2h14A 317 74.05 2qsxA 218 74.83 1r0mA 375 75.38 c.1.11.2,d.54.1.1 104747,104748 2j6aA 141 75.83 2aqmA 154 75.84 2ia1A 178 76.91 1ec7A 446 77.84 c.1.11.2,d.54.1.1 29218,38862 1bj7 156 79.63 2v89A 82 81.86 3bdrA 190 82.30 1zndA 174 82.55 b.60.1.1 125380 2ra6A 166 82.63 1x1mA 107 82.77 d.15.1.1 121592 1qy1A 174 85.43 b.60.1.1 96568 2gc7A 386 86.86 b.69.2.1 134954 1jhfA 202 87.85 a.4.5.2,b.87.1.1 63057,63058 2avwA 311 89.15 1jv4A 162 89.17 b.60.1.1 67343