# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 2.09e-21 2ckfA 454 3.75e-21 1uliA 460 6.01e-21 b.33.1.2,d.129.3.3 107921,107922 2b1xA 470 1.11e-20 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 1.37e-20 b.33.1.2,d.129.3.3 128804,128805 2de6A 392 1.97e-20 b.33.1.2,d.129.3.3 131415,131416 1o7nA 449 5.00e-20 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 6.38e-20 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 4.95e-19 1fqtA 112 2.42e-16 b.33.1.1 24441 2e4qA 109 3.49e-16 1rie 129 3.89e-16 1vm9A 111 5.01e-16 b.33.1.1 108886 1nykA 165 5.89e-16 b.33.1.1 86408 1rfs 139 6.08e-16 2i7fA 108 6.84e-16 1rfsA 139 9.92e-16 b.33.1.1 24434 3c0dA 119 1.03e-15 1sjgA 112 2.66e-15 b.33.1.1 105647 1rieA 129 3.04e-15 b.33.1.1 24427 2de6D 115 3.21e-15 2nvgA 141 3.32e-15 1g8kB 133 3.39e-15 b.33.1.1 24435 2q3wA 111 3.57e-15 b.33.1.1 139813 2jo6A 113 2.97e-14 2nwfA 141 6.98e-14 2e74D 179 3.26e-13 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 4.81e-12 b.33.1.1 71745 1ppjE 196 8.98e-12 b.33.1.1,f.23.12.1 104260,104261 2jvmA 80 3.530 2hf1A 68 4.235 1gof 639 4.509 1f5mA 180 5.582 d.110.2.1 40895 2jrrA 67 8.068 1el6A 219 9.615 d.182.1.1 42606 2p4oA 306 9.701 1avgI 142 10.61 b.60.1.3 27229 1ijqA 316 14.48 b.68.5.1,g.3.11.1 62506,62507 1nszA 347 14.75 b.30.5.4 80724 1i4uA 181 18.14 b.60.1.1 61732 2qe8A 343 20.06 1sy3A 184 20.30 b.60.1.1 106110 2h8gA 267 22.36 1tqzA 133 29.56 b.55.1.11 119327 1m2kA 249 30.22 c.31.1.5 84754 1bj7A 156 30.57 b.60.1.1 27113 2bibA 547 32.14 b.109.1.1,d.157.1.8 128581,128582 1k8kC 372 34.93 b.69.4.1 68308 1hw7A 255 38.74 d.193.1.1 61297 1s2dA 167 38.86 c.23.14.1 98377 2ct7A 86 39.73 g.44.1.4 130791 1r62A 160 39.90 d.122.1.3 104816 1v87A 114 40.50 g.44.1.1 108422 1c4rA 182 40.97 b.29.1.4 24229 1esoA 154 42.08 b.1.8.1 22293 2v89A 82 43.59 3bdrA 190 45.85 2gnpA 266 47.50 1k3iA 656 49.44 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2jz8A 87 50.32 2dhoA 235 57.25 2aq5A 402 57.29 1kb0A 677 59.82 a.3.1.6,b.70.1.1 68378,68379 1r77A 103 61.33 2biiA 424 64.27 1hxnA 219 65.43 b.66.1.1 27529 1xeoA 168 68.10 d.167.1.1 121913 2podA 410 68.49 2nv4A 147 69.38 1gt1A 159 69.47 b.60.1.1 90515 1z7gA 217 69.87 c.61.1.1 124624 1db3A 372 71.09 c.2.1.2 29813 1qxmA 300 74.95 b.42.2.1,b.42.2.1 96533,96534 1dm9A 133 75.79 d.66.1.3 39560 1jdqA 98 77.81 d.68.3.3 66559 2oizA 361 78.39 1jzuA 157 78.79 b.60.1.1 84271 1i6aA 219 78.96 c.94.1.1 61827 2pm7B 297 80.07 2ra6A 166 81.32 1ddzA 496 81.69 c.53.2.1,c.53.2.1 33372,33373 2ia1A 178 81.81 1kxoA 184 82.37 b.60.1.1 84475 1zndA 174 84.80 b.60.1.1 125380 1ca1 370 88.54 1mup 166 89.74