# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 2.30e-22 1uliA 460 3.74e-22 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 4.37e-22 2de6A 392 1.34e-21 b.33.1.2,d.129.3.3 131415,131416 2bmoA 447 1.49e-21 b.33.1.2,d.129.3.3 128804,128805 2b1xA 470 1.89e-21 b.33.1.2,d.129.3.3 127675,127676 1o7nA 449 4.00e-21 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 4.42e-21 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 4.24e-20 1fqtA 112 1.79e-17 b.33.1.1 24441 2e4qA 109 4.49e-17 1rfs 139 5.17e-17 2i7fA 108 5.46e-17 1rfsA 139 6.07e-17 b.33.1.1 24434 1vm9A 111 7.01e-17 b.33.1.1 108886 1nykA 165 7.78e-17 b.33.1.1 86408 3c0dA 119 7.80e-17 1rie 129 1.16e-16 1sjgA 112 2.19e-16 b.33.1.1 105647 2q3wA 111 3.32e-16 b.33.1.1 139813 2de6D 115 3.49e-16 1g8kB 133 4.01e-16 b.33.1.1 24435 2nvgA 141 4.10e-16 1rieA 129 9.17e-16 b.33.1.1 24427 2jo6A 113 3.34e-15 2nwfA 141 6.08e-15 2e74D 179 3.63e-14 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 9.17e-13 b.33.1.1 71745 1ppjE 196 1.56e-12 b.33.1.1,f.23.12.1 104260,104261 2hf1A 68 1.176 2jvmA 80 2.130 1ijqA 316 2.220 b.68.5.1,g.3.11.1 62506,62507 2p4oA 306 2.511 1gof 639 2.754 1sy3A 184 3.911 b.60.1.1 106110 2jrrA 67 5.858 1f5mA 180 8.051 d.110.2.1 40895 1el6A 219 10.07 d.182.1.1 42606 1nszA 347 12.72 b.30.5.4 80724 1k3iA 656 13.19 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2ct7A 86 13.59 g.44.1.4 130791 1g72A 573 13.71 b.70.1.1 27680 2bibA 547 13.91 b.109.1.1,d.157.1.8 128581,128582 2h8gA 267 14.36 2qe8A 343 14.82 2dhoA 235 16.47 1avgI 142 18.77 b.60.1.3 27229 1kb0A 677 20.43 a.3.1.6,b.70.1.1 68378,68379 2gnpA 266 20.82 1m2kA 249 23.14 c.31.1.5 84754 1hxnA 219 23.34 b.66.1.1 27529 1s2dA 167 24.88 c.23.14.1 98377 1i4uA 181 25.15 b.60.1.1 61732 1epaA 164 28.08 b.60.1.1 27128 1lcyA 325 29.34 b.36.1.4,b.47.1.1 73834,73835 1r77A 103 30.32 1k8kC 372 35.34 b.69.4.1 68308 1r62A 160 36.60 d.122.1.3 104816 1r0mA 375 40.81 c.1.11.2,d.54.1.1 104747,104748 2v89A 82 42.50 1xeoA 168 43.49 d.167.1.1 121913 1ddzA 496 45.32 c.53.2.1,c.53.2.1 33372,33373 2biiA 424 45.35 1hw7A 255 48.57 d.193.1.1 61297 2jz8A 87 52.83 1g5cA 170 54.69 c.53.2.1 60264 1h75A 81 55.91 c.47.1.1 60716 1ec7A 446 56.93 c.1.11.2,d.54.1.1 29218,38862 1dm9A 133 58.64 d.66.1.3 39560 1mdlA 359 58.97 c.1.11.2,d.54.1.1 29247,38891 2ia1A 178 59.11 2dg5A 366 59.91 d.153.1.6 131500 2podA 410 64.19 1mup 166 64.84 2rdxA 379 67.70 1jzuA 157 69.66 b.60.1.1 84271 1c4rA 182 70.01 b.29.1.4 24229 2j6aA 141 72.13 1ixcA 294 72.72 a.4.5.37,c.94.1.1 83764,83765 2pceA 386 77.84 2d1zA 436 77.90 6rlxA 24 79.22 1f8yA 157 81.26 c.23.14.1 31395 2ipuG 226 81.54 2dsxA 52 82.07 g.41.5.1 131699 2iy2A 72 84.74 1b2pA 119 86.88 b.78.1.1 27998 2z3zA 706 87.66