# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 8.00e-23 1uliA 460 1.28e-22 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 1.55e-22 2de6A 392 2.77e-22 b.33.1.2,d.129.3.3 131415,131416 2b1xA 470 5.72e-22 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 5.82e-22 b.33.1.2,d.129.3.3 128804,128805 1o7nA 449 1.55e-21 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 2.29e-21 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 9.63e-21 1fqtA 112 4.80e-18 b.33.1.1 24441 2e4qA 109 1.08e-17 1vm9A 111 1.44e-17 b.33.1.1 108886 2i7fA 108 2.94e-17 1rfs 139 3.45e-17 3c0dA 119 3.47e-17 1nykA 165 3.73e-17 b.33.1.1 86408 1rie 129 4.39e-17 1rfsA 139 5.11e-17 b.33.1.1 24434 2de6D 115 6.76e-17 1sjgA 112 7.22e-17 b.33.1.1 105647 2q3wA 111 1.01e-16 b.33.1.1 139813 1rieA 129 3.86e-16 b.33.1.1 24427 2nvgA 141 4.52e-16 1g8kB 133 5.28e-16 b.33.1.1 24435 2jo6A 113 5.90e-16 2nwfA 141 8.26e-15 2e74D 179 3.98e-14 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 1.25e-12 b.33.1.1 71745 1ppjE 196 1.74e-12 b.33.1.1,f.23.12.1 104260,104261 2hf1A 68 1.168 2jvmA 80 2.188 2p4oA 306 4.696 1ijqA 316 5.317 b.68.5.1,g.3.11.1 62506,62507 2jrrA 67 5.461 1f5mA 180 5.986 d.110.2.1 40895 1gof 639 8.123 1el6A 219 8.942 d.182.1.1 42606 1sy3A 184 11.59 b.60.1.1 106110 1avgI 142 11.70 b.60.1.3 27229 2qe8A 343 12.40 1r77A 103 13.34 2bibA 547 13.35 b.109.1.1,d.157.1.8 128581,128582 2ct7A 86 15.90 g.44.1.4 130791 2h8gA 267 17.32 1hxnA 219 17.68 b.66.1.1 27529 1nszA 347 18.40 b.30.5.4 80724 2gnpA 266 22.71 1ec7A 446 30.83 c.1.11.2,d.54.1.1 29218,38862 1dm9A 133 31.21 d.66.1.3 39560 2v89A 82 31.34 1m2kA 249 33.91 c.31.1.5 84754 1kb0A 677 35.00 a.3.1.6,b.70.1.1 68378,68379 1i4uA 181 35.46 b.60.1.1 61732 1k8kC 372 37.17 b.69.4.1 68308 1xeoA 168 37.26 d.167.1.1 121913 1epaA 164 37.77 b.60.1.1 27128 1jv4A 162 43.76 b.60.1.1 67343 2j6aA 141 44.58 1jzuA 157 44.68 b.60.1.1 84271 1r0mA 375 45.02 c.1.11.2,d.54.1.1 104747,104748 1mup 166 45.56 1zndA 174 48.15 b.60.1.1 125380 1bj7A 156 49.74 b.60.1.1 27113 1v87A 114 50.10 g.44.1.1 108422 2rdxA 379 50.64 2j7qA 232 51.25 2biiA 424 51.33 1s2dA 167 52.97 c.23.14.1 98377 1k3iA 656 52.97 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1ddzA 496 55.90 c.53.2.1,c.53.2.1 33372,33373 1lcyA 325 56.45 b.36.1.4,b.47.1.1 73834,73835 1yeyA 444 57.45 c.1.11.2,d.54.1.1 116664,116665 2ra6A 166 59.00 3bdrA 190 59.14 1r62A 160 59.33 d.122.1.3 104816 1mdlA 359 61.70 c.1.11.2,d.54.1.1 29247,38891 1jdqA 98 61.91 d.68.3.3 66559 2jz8A 87 62.93 2aq5A 402 64.23 1i06A 180 65.10 b.60.1.1 27131 1bj7 156 68.22 2z3zA 706 69.85 1qy1A 174 72.75 b.60.1.1 96568 1g5cA 170 73.28 c.53.2.1 60264 1vbkA 307 73.77 c.26.2.6,d.308.1.1 119957,119958 2ia1A 178 73.82 1kxoA 184 74.54 b.60.1.1 84475 2podA 410 75.63 2hneA 436 76.00 1c4rA 182 77.28 b.29.1.4 24229 2hxtA 441 78.45 1t0qA 498 79.69 a.25.1.2 106220 3cngA 189 81.71 2nv4A 147 82.56 1hw7A 255 82.71 d.193.1.1 61297 2yzsA 315 84.69 1pjxA 314 87.34 b.68.6.1 104167 1e1aA 314 89.78 b.68.6.1 59155