# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gbwA	454	1.71e-21		
2ckfA	454	2.90e-21		
1uliA	460	4.30e-21	b.33.1.2,d.129.3.3	107921,107922
2de6A	392	1.42e-20	b.33.1.2,d.129.3.3	131415,131416
2bmoA	447	1.53e-20	b.33.1.2,d.129.3.3	128804,128805
2b1xA	470	1.78e-20	b.33.1.2,d.129.3.3	127675,127676
1eg9A	449	8.84e-20	b.33.1.2,d.129.3.3	24443,41322
1o7nA	449	9.56e-20	b.33.1.2,d.129.3.3	81162,81163
1z02A	446	1.65e-18		
2e4qA	109	3.52e-16		
1fqtA	112	3.81e-16	b.33.1.1	24441
1vm9A	111	9.19e-16	b.33.1.1	108886
2i7fA	108	1.06e-15		
3c0dA	119	1.11e-15		
1rfsA	139	1.15e-15	b.33.1.1	24434
1rfs	139	1.36e-15		
1sjgA	112	1.77e-15	b.33.1.1	105647
2q3wA	111	1.95e-15	b.33.1.1	139813
1rie	129	2.54e-15		
2de6D	115	2.58e-15		
2jo6A	113	8.23e-15		
1rieA	129	1.92e-14	b.33.1.1	24427
1g8kB	133	9.77e-14	b.33.1.1	24435
2e74D	179	1.14e-13	b.33.1.1,f.23.12.1	132049,132050
1nykA	165	1.35e-13	b.33.1.1	86408
2nvgA	141	9.64e-13		
2nwfA	141	8.19e-12		
1ppjE	196	5.21e-10	b.33.1.1,f.23.12.1	104260,104261
1jm1A	204	9.18e-10	b.33.1.1	71745
2qf7A	1165	8.168		
2qsxA	218	10.90		
1aiu	105	16.98		
1f9mA	112	17.73	c.47.1.1	32736
1epaA	164	20.18	b.60.1.1	27128
1faaA	124	20.92	c.47.1.1	32738
1erw	105	21.00		
1r26A	125	23.75	c.47.1.1	96847
1erv	105	25.24		
1k32A	1045	27.61	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2hf1A	68	29.23		
1x1mA	107	30.88	d.15.1.1	121592
1avgI	142	32.02	b.60.1.3	27229
1yjrA	75	34.66		
2bibA	547	34.90	b.109.1.1,d.157.1.8	128581,128582
1thx	115	39.19		
2ifqA	105	43.68	c.47.1.1	137343
2trxA	108	45.98	c.47.1.1	32719
1qxmA	300	47.02	b.42.2.1,b.42.2.1	96533,96534
1r77A	103	48.17		
1vqoK	132	48.92	b.39.1.1	120372
1iznB	277	49.09	e.43.1.2	83848
1ou0A	207	52.06	c.23.17.1	93536
1fb6A	105	54.26	c.47.1.1	32739
2ct7A	86	54.48	g.44.1.4	130791
1ixcA	294	56.04	a.4.5.37,c.94.1.1	83764,83765
1i4uA	181	57.67	b.60.1.1	61732
1r7mA	235	57.96	d.95.2.1,d.95.2.1	111713,111714
1cc8A	73	58.19	d.58.17.1	39343
1el6A	219	61.18	d.182.1.1	42606
2qyxA	238	62.03		
2f51A	118	73.14		
2hqsA	415	73.53	b.68.4.1,c.51.2.1	136662,136663
1wmjA	130	76.19		
2bbkH	355	76.99	b.69.2.1	27634
1y3jA	77	77.53		
1uz8B	212	85.97	b.1.1.1,b.1.1.2	108168,108169
2ipuG	226	88.66		
2oh1A	179	89.78