# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 1.20e-23 1uliA 460 1.27e-23 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 2.28e-23 2b1xA 470 6.17e-23 b.33.1.2,d.129.3.3 127675,127676 2bmoA 447 1.71e-22 b.33.1.2,d.129.3.3 128804,128805 2de6A 392 1.93e-22 b.33.1.2,d.129.3.3 131415,131416 1o7nA 449 3.18e-22 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 3.37e-22 b.33.1.2,d.129.3.3 24443,41322 1z02A 446 2.43e-21 2e4qA 109 3.53e-18 1fqtA 112 8.32e-18 b.33.1.1 24441 3c0dA 119 1.53e-17 1vm9A 111 1.70e-17 b.33.1.1 108886 2i7fA 108 1.96e-17 1rfs 139 2.19e-17 2de6D 115 2.91e-17 1rie 129 5.32e-17 1sjgA 112 5.63e-17 b.33.1.1 105647 1rfsA 139 5.84e-17 b.33.1.1 24434 2q3wA 111 6.49e-17 b.33.1.1 139813 2jo6A 113 1.06e-16 1rieA 129 6.51e-16 b.33.1.1 24427 1nykA 165 1.25e-15 b.33.1.1 86408 2nvgA 141 1.05e-14 1g8kB 133 2.00e-14 b.33.1.1 24435 2e74D 179 2.58e-14 b.33.1.1,f.23.12.1 132049,132050 2nwfA 141 1.39e-13 1jm1A 204 7.98e-12 b.33.1.1 71745 1ppjE 196 2.92e-11 b.33.1.1,f.23.12.1 104260,104261 1s2dA 167 8.808 c.23.14.1 98377 1erv 105 8.854 2j7nA 1022 10.15 1aiu 105 13.58 1r26A 125 15.19 c.47.1.1 96847 1erw 105 15.28 2hf1A 68 15.50 2ct7A 86 17.16 g.44.1.4 130791 2f51A 118 21.74 1f9mA 112 23.39 c.47.1.1 32736 1i4uA 181 23.91 b.60.1.1 61732 1yudA 170 24.32 b.82.1.16 124046 1xkfA 133 25.92 d.37.1.1,d.37.1.1 122077,122078 2qsxA 218 26.26 1thx 115 26.59 1faaA 124 29.56 c.47.1.1 32738 2h0bA 184 32.86 2jvmA 80 34.47 2ifqA 105 35.31 c.47.1.1 137343 2rc3A 135 36.29 1y5hA 133 36.60 d.37.1.1,d.37.1.1 122635,122636 1wmjA 130 38.02 2trxA 108 38.94 c.47.1.1 32719 1g60A 260 39.41 c.66.1.11 70151 1f8yA 157 40.61 c.23.14.1 31395 2jrrA 67 40.96 1avgI 142 42.70 b.60.1.3 27229 2podA 410 42.93 1p22A 435 43.95 a.158.1.1,b.69.4.1 87715,87716 1gh2A 107 45.33 c.47.1.1 60515 1fb6A 105 45.35 c.47.1.1 32739 1c4rA 182 49.83 b.29.1.4 24229 2hqsA 415 49.84 b.68.4.1,c.51.2.1 136662,136663 1f5mA 180 54.96 d.110.2.1 40895 1cc8A 73 56.25 d.58.17.1 39343 2nycA 144 58.05 d.37.1.1 138812 1epaA 164 58.39 b.60.1.1 27128 2iyaA 424 59.89 1t00A 112 60.32 1tg6A 277 60.74 c.14.1.1 119236 1ecfA 504 63.33 c.61.1.1,d.153.1.1 34053,41820 1f3zA 161 64.71 b.84.3.1 28273 2uv4A 152 66.78 1w96A 554 68.99 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 1l0qA 391 69.19 b.1.3.1,b.69.2.3 77644,77645 1sjqA 105 70.50 d.58.7.1 105660 2bz1A 196 70.66 c.144.1.1 129532 1dypA 271 73.44 b.29.1.2 24185 1dv1A 449 80.42 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1nw2A 105 83.44 c.47.1.1 92215 1gprA 162 84.96 b.84.3.1 28267 2d28C 149 85.29 1kxoA 184 86.29 b.60.1.1 84475 2h8gA 267 87.31 1ct9A 553 87.40 c.26.2.1,d.153.1.1 31616,41834 1jzuA 157 88.53 b.60.1.1 84271