# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gbwA 454 6.29e-19 2b1xA 470 1.50e-18 b.33.1.2,d.129.3.3 127675,127676 1uliA 460 6.32e-18 b.33.1.2,d.129.3.3 107921,107922 2bmoA 447 1.05e-17 b.33.1.2,d.129.3.3 128804,128805 2ckfA 454 1.21e-17 2de6A 392 1.28e-17 b.33.1.2,d.129.3.3 131415,131416 1eg9A 449 6.73e-17 b.33.1.2,d.129.3.3 24443,41322 1o7nA 449 1.17e-16 b.33.1.2,d.129.3.3 81162,81163 1z02A 446 1.51e-16 3c0dA 119 4.32e-14 1fqtA 112 9.08e-14 b.33.1.1 24441 2e4qA 109 2.38e-13 2de6D 115 2.12e-12 1sjgA 112 7.91e-12 b.33.1.1 105647 1vm9A 111 1.21e-11 b.33.1.1 108886 2i7fA 108 1.48e-11 2jo6A 113 2.02e-11 2q3wA 111 4.45e-11 b.33.1.1 139813 1rfsA 139 1.80e-08 b.33.1.1 24434 1rfs 139 2.55e-08 1rieA 129 1.25e-06 b.33.1.1 24427 2e74D 179 3.45e-06 b.33.1.1,f.23.12.1 132049,132050 1rie 129 3.63e-06 1ppjE 196 5.15e-06 b.33.1.1,f.23.12.1 104260,104261 1g8kB 133 1.73e-05 b.33.1.1 24435 1nykA 165 2.02e-05 b.33.1.1 86408 2nvgA 141 0.000355 2nwfA 141 0.000777 1jm1A 204 0.002957 b.33.1.1 71745 1ut1A 148 1.847 b.2.3.6 108014 1h09A 338 2.662 b.109.1.1,c.1.8.8 83420,83421 2j8gA 339 3.939 2aiqA 231 5.268 3ck2A 176 6.042 1mw7A 240 7.715 e.39.1.1 79557 2id0A 644 9.138 1lshA 1056 9.372 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2pbcA 102 9.898 2bibA 547 11.72 b.109.1.1,d.157.1.8 128581,128582 2afgA 140 12.05 b.42.1.1 25514 3b49A 211 14.30 1ao5A 237 16.07 b.47.1.2 26334 1at0A 145 16.83 b.86.1.1 28374 1at0 145 16.91 2b7fA 116 17.79 1bfgA 146 18.24 b.42.1.1 25485 1ybyA 215 18.27 1sr4A 206 20.01 b.42.2.1 105948 1w24A 182 20.58 d.159.1.7 120579 2bcmA 165 21.27 2oauA 306 21.71 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 2a22A 215 21.78 d.159.1.7 126025 2d37A 176 21.88 1xkpC 143 21.90 d.198.1.1 122088 1xfpA 142 22.54 b.1.1.1 109587 1feuA 206 23.21 b.53.1.1 59801 2fmlA 273 25.82 a.4.5.68,d.113.1.6 133778,133779 1o7iA 119 27.11 b.40.4.3 86642 2qqrA 118 27.95 1bkfA 107 28.23 d.26.1.1 38382 1dv1A 449 30.26 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1i6aA 219 31.07 c.94.1.1 61827 1go4A 205 32.03 d.135.1.1 70292 2bgzA 299 33.28 2avwA 311 33.34 2gagC 210 35.20 2pw0A 397 36.06 2gfaA 119 37.29 b.34.9.1,b.34.9.1 135089,135090 1bkf 107 37.30 1y08A 323 38.30 d.3.1.12 116280 2qf3A 243 39.46 2cg7A 90 39.77 g.27.1.1,g.27.1.1 130423,130424 2ja9A 175 41.12 4fgf 146 41.61 2q0lA 311 42.01 1qu0A 191 42.90 b.29.1.4 24225 1j8rA 196 42.94 b.2.3.3 62745 1ct9A 553 43.34 c.26.2.1,d.153.1.1 31616,41834 2jv2A 83 44.85 1spjA 238 44.99 1qg3A 195 45.08 b.1.2.1,b.1.2.1 21993,21994 1tjgH 237 46.40 b.1.1.1,b.1.1.2 112446,112447 1a12A 413 46.83 b.69.5.1 27663 1knxA 312 47.95 c.98.2.1,c.91.1.2 77459,77460 1uebA 184 48.99 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1zvyA 136 49.06 1krhA 338 49.11 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1h8gA 95 50.99 b.109.1.1 65735 1xezA 721 51.75 2imjA 166 52.35 1khbA 625 53.34 c.91.1.1,c.109.1.1 68606,68607 1mvfA 135 53.66 b.1.1.1 85141 2qckA 167 54.31 1dv2A 452 54.86 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1vr5A 547 54.98 c.94.1.1 120437 1j48A 110 55.41 b.1.7.1 84112 2e12A 101 56.83 1zu0A 529 57.90 2j6gA 266 58.35 1bfg 146 60.48 2io8A 619 60.62 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 2c61A 469 60.75 1konA 249 61.17 e.39.1.1 72823 2qf2A 624 63.03 1a8pA 258 64.16 b.43.4.2,c.25.1.1 25654,31544 2ipuG 226 64.31 1te0A 318 65.26 b.36.1.4,b.47.1.1 112400,112401 1uthA 315 65.98 c.94.1.1 108032 1bqyA 234 66.12 b.47.1.2 26332 3c5mA 396 66.19 1ro0A 216 66.43 d.264.1.2 97664 2p49B 123 66.94 1a2yB 116 67.04 b.1.1.1 19927 2q0zX 339 68.31 1wlgA 299 68.73 b.152.1.1 114726 2mcm 112 69.22 1q6hA 224 69.23 d.26.1.1 95975 1e44B 96 70.53 b.101.1.1 59220 2vgpA 284 71.46 1q6uA 245 71.54 d.26.1.1 95998 2vfxA 206 71.71 2fafA 608 72.49 1knmA 130 72.93 b.42.2.1 72781 1zvhA 134 74.28 2mbrA 340 74.97 d.145.1.2,d.146.1.1 41749,41762 1barA 140 76.17 b.42.1.1 25504 1ro2A 216 76.44 d.264.1.2 97665 2p45B 123 77.28 1noaA 113 78.05 b.1.7.1 22208 1vi3A 170 78.10 b.17.1.2 100730 1yoaA 159 78.36 b.45.1.2 123775 2ra2A 64 78.38 2j7qA 232 78.50 2mcmA 112 78.79 b.1.7.1 22207 2b71A 196 78.96 b.62.1.1 128004 2v9vA 135 81.63 2gc9A 179 81.68 b.60.1.6 134972 2r0xA 158 82.13 3cc1A 433 82.37 2rhsB 800 82.95 1jetA 517 83.40 c.94.1.1 35718 2pz4A 239 83.41 1gotB 340 86.41 b.69.4.1 27648 2a6tA 271 86.46 a.242.1.1,d.113.1.7 126309,126310 1x31C 206 86.55 2uyeA 307 86.55 1r9hA 135 86.84 d.26.1.1 97260 2shpA 525 87.53 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 1fuxA 166 88.25 b.17.1.2 60034 1ijtA 128 89.21 b.42.1.1 62510