# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1shxA 139 3.052e-20 b.6.1.5 118962 1ikoP 142 3.028e-18 b.6.1.5 71243 1g9mG 306 3.137e-02 1gc1G d.172.1.1 42492 1yymG 302 5.513e-01 d.172.1.1 124232 1bm4A 33 6.770e-01 1bm4A j.47.1.1 46325 2czdA 207 1.380e+00 c.1.2.3 131045 1bdyA 124 1.498e+00 1bdyA b.7.1.1 23190 2yyuA 226 2.100e+00 1xmeA 558 4.849e+00 f.24.1.1 122143 2e6cA 244 5.395e+00 1xyfA 428 5.520e+00 1taxA b.42.2.1 25577 c.1.8.3 28909 1vqtA 192 5.963e+00 c.1.2.3 120417 2hqbA 284 6.385e+00 1x1zA 216 8.345e+00 c.1.2.3 121613 1k1gA 123 8.899e+00 d.51.1.1 68015 1eejA 217 9.020e+00 1eejA c.47.1.9 33057 d.17.3.1 38071 1xyzA 321 9.258e+00 1taxA c.1.8.3 28804 1qnf 476 9.711e+00 1qnf 2ny1A 306 9.860e+00 1e5gA 121 1.178e+01 1e5gA g.18.1.1 44843 g.18.1.1 44844 1wimA 95 1.249e+01 g.44.1.1 114677 1b8aA 439 1.277e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1u3dA 486 1.317e+01 a.99.1.1 107638 c.28.1.1 107639 3brnA 154 1.343e+01 1srqA 331 1.368e+01 e.55.1.1 105967 2b9dA 53 1.393e+01 1xiwB 67 1.435e+01 b.1.1.4 115368 1i1wA 304 1.521e+01 c.1.8.3 76732 2hnxA 137 1.672e+01 b.60.1.2 136633 2occA 515 1.685e+01 2occA f.24.1.1 43518 1fh9A 313 1.715e+01 1taxA c.1.8.3 28913 1np7A 484 1.807e+01 a.99.1.1 80677 c.28.1.1 80678 1pn0A 653 1.877e+01 c.3.1.2 94918 c.47.1.10 94919 d.16.1.2 94920 1ur1A 347 2.179e+01 c.1.8.3 99804 1nq6A 303 2.200e+01 c.1.8.3 92046 1n82A 331 2.205e+01 c.1.8.3 91703 2d1zA 428 2.238e+01 1j9lA 248 2.268e+01 c.106.1.1 62762 1f0iA 497 2.353e+01 1f0iA d.136.1.2 59566 d.136.1.2 59567 1gc1G 298 2.415e+01 1gc1G d.172.1.1 42493 1wz7A 103 2.465e+01 d.330.1.1 121480 1kcw 1018 2.546e+01 1kcw 1km4A 213 2.686e+01 c.1.2.3 72740 2ftwA 485 2.714e+01 b.92.1.3 134083 c.1.9.6 134084 1k6aA 303 2.723e+01 c.1.8.3 72081 1tezA 475 2.739e+01 a.99.1.1 112409 c.28.1.1 112410 2ddzA 189 2.798e+01 1a8h 501 2.850e+01 1a8h 1uvqA 183 2.892e+01 b.1.1.2 100062 d.19.1.1 100063 1j5xA 320 2.978e+01 c.80.1.1 71591 1clxA 346 3.034e+01 1taxA c.1.8.3 28899 1vdhA 248 3.052e+01 d.58.4.10 108523 2ex5A 208 3.098e+01 2jraA 68 3.160e+01 1iakA 183 3.235e+01 1iakA b.1.1.2 21625 d.19.1.1 38199 1v54A 515 3.249e+01 f.24.1.1 100321 1jb0F 142 3.260e+01 1jb0F f.23.16.1 62825 2bh0A 208 3.287e+01 1lu8A 35 3.299e+01 g.3.6.2 91125 1vbuA 325 3.488e+01 c.1.8.3 119963 2bl5A 135 3.508e+01 d.51.1.1 128728 1e42A 234 3.512e+01 1e42A b.1.10.1 22316 d.105.1.1 40792 1hmtA 132 3.527e+01 b.60.1.2 27169 2j04A 588 3.554e+01 1ehkA 545 3.609e+01 1ehkA f.24.1.1 43624 1asyA 491 3.732e+01 1b8aA b.40.4.1 25242 d.104.1.1 40763 2exxA 306 3.736e+01 1o8vA 134 3.805e+01 b.60.1.2 86680 2bnjA 303 3.896e+01 c.1.8.3 128832 1he2A 206 3.944e+01 1he2A c.2.1.2 60966 1g7nA 132 3.948e+01 b.60.1.2 83274 2fm8A 135 3.965e+01 d.198.1.1 133767