# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1shxA 138 1.61e-24 b.6.1.5 118962 1ikoP 178 1.41e-23 b.6.1.5 71243 1h6rA 236 1.49e+00 d.22.1.1 65683 1c7uA 85 1.66e+00 1mnmA d.88.1.1 40238 1egwA 77 1.97e+00 1mnmA d.88.1.1 40234 1eerB 227 2.78e+00 1eerB b.1.2.1 22011 b.1.2.1 22012 1f56A 91 4.02e+00 2cbp b.6.1.1 22896 2f06A 144 4.60e+00 d.58.18.11 132652 d.58.18.11 132653 1nubA 229 4.67e+00 1sra a.39.1.3 17191 g.3.11.3 44330 g.68.1.1 44715 2r2cA 183 4.67e+00 1yq5A 144 5.85e+00 1b9cA 236 7.04e+00 1ema d.22.1.1 38358 1ri6A 343 7.32e+00 b.69.11.1 97503 1tiqA 180 7.54e+00 d.108.1.1 107010 2oitA 434 8.16e+00 2fu5C 183 8.32e+00 c.37.1.8 134104 2uv3A 126 9.23e+00 1avaC 181 9.32e+00 1avaC b.42.4.1 25604 1ema 236 9.35e+00 1ema 1orvA 728 1.13e+01 b.70.3.1 87354 c.69.1.24 87355 1wqkA 42 1.22e+01 1ebpA 211 1.28e+01 1eerB b.1.2.1 22023 b.1.2.1 22024 1phm 310 1.32e+01 1phm 1e4eA 343 1.33e+01 1iow c.30.1.2 59221 d.142.1.1 59222 3bdrA 190 1.35e+01 2awkA 228 1.40e+01 1oxdA 227 1.41e+01 d.22.1.1 93687 2jixB 225 1.42e+01 1xniA 118 1.43e+01 b.34.9.1 115582 b.34.9.1 115583 3cdxA 354 1.51e+01 1v30A 124 1.52e+01 d.269.1.1 113496 1kypA 237 1.58e+01 d.22.1.1 73280 2e8yA 718 1.62e+01 7odcA 424 1.64e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 2cbpA 96 1.74e+01 b.6.1.1 22895 2g6bA 180 1.78e+01 c.37.1.8 134701 1a4jA 217 1.84e+01 8fabA b.1.1.1 20232 b.1.1.2 21244 2gujA 155 1.93e+01 1qw9A 502 1.98e+01 b.71.1.2 96466 c.1.8.3 96467 2adgA 214 1.99e+01 1cewI 108 2.01e+01 1cewI d.17.1.2 37999 1ebaA 215 2.05e+01 1eerB b.1.2.1 22015 b.1.2.1 22016 1ospL 214 2.12e+01 32c2A b.1.1.1 20116 b.1.1.2 21146 3cla 213 2.30e+01 3cla 3claA 213 2.30e+01 c.43.1.1 32610 1m4uA 206 2.39e+01 g.17.1.7 78625 3b46A 447 2.43e+01 1xnaA 183 2.52e+01 1xnaA b.18.1.8 23773 2qh0A 138 2.58e+01 1yymG 313 2.63e+01 d.172.1.1 124232 2nvmA 126 2.66e+01 d.326.1.1 138631 3cewA 125 2.70e+01 1klqA 197 2.81e+01 d.135.1.1 68689 1tetL 216 2.84e+01 32c2A b.1.1.1 19902 b.1.1.2 20996 1ws8A 109 2.86e+01 b.6.1.1 114843 1sdwA 314 2.87e+01 b.121.1.2 98810 b.121.1.2 98811 1roaA 122 2.89e+01 d.17.1.2 105024 1tl2A 236 3.11e+01 1tl2A b.67.1.1 27541 1nqbA 256 3.12e+01 1mfa b.1.1.1 20043 b.1.1.1 20042 1otgA 125 3.18e+01 1otgA d.80.1.2 39831 1flrL 219 3.26e+01 8fabA b.1.1.1 19904 b.1.1.2 20998 1f97A 212 3.38e+01 1f97A b.1.1.1 19763 b.1.1.4 21764 3c5xC 130 3.56e+01 2g3rA 123 3.56e+01 b.34.9.1 134570 b.34.9.1 134571 1ad0A 213 3.65e+01 8fabA b.1.1.1 20124 b.1.1.2 21154 1a4kA 217 3.67e+01 8fabA b.1.1.1 20236 b.1.1.2 21248 1yh3A 256 3.67e+01 1rzjG 321 3.80e+01 d.172.1.1 98200