# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1shxA 138 8.80e-29 b.6.1.5 118962 1ikoP 178 1.81e-27 b.6.1.5 71243 1avaC 181 5.83e-01 1avaC b.42.4.1 25604 1f56A 91 1.07e+00 2cbp b.6.1.1 22896 1orvA 728 1.15e+00 b.70.3.1 87354 c.69.1.24 87355 1h6rA 236 1.21e+00 d.22.1.1 65683 1egwA 77 1.38e+00 1mnmA d.88.1.1 40234 1c7uA 85 1.43e+00 1mnmA d.88.1.1 40238 2jixB 225 1.71e+00 1a4jA 217 1.76e+00 8fabA b.1.1.1 20232 b.1.1.2 21244 1ri6A 343 1.77e+00 b.69.11.1 97503 1yq5A 144 1.89e+00 1nubA 229 1.95e+00 1sra a.39.1.3 17191 g.3.11.3 44330 g.68.1.1 44715 2uv3A 126 2.51e+00 2r2cA 183 2.68e+00 2h5uA 499 2.98e+00 2awkA 228 3.07e+00 2g3rA 123 3.43e+00 b.34.9.1 134570 b.34.9.1 134571 1b9cA 236 3.98e+00 1ema d.22.1.1 38358 1ema 236 4.06e+00 1ema 1kypA 237 4.14e+00 d.22.1.1 73280 1flrL 219 4.14e+00 8fabA b.1.1.1 19904 b.1.1.2 20998 1oxdA 227 4.25e+00 d.22.1.1 93687 1pvxA 194 4.35e+00 1axkA b.29.1.11 24341 1x9uA 116 4.98e+00 1rc6A 261 5.56e+00 b.82.1.11 97287 2f06A 144 5.59e+00 d.58.18.11 132652 d.58.18.11 132653 2cbpA 96 5.76e+00 b.6.1.1 22895 1r4cA 110 5.81e+00 d.17.1.2 104793 1zm8A 259 5.96e+00 1eerB 227 6.04e+00 1eerB b.1.2.1 22011 b.1.2.1 22012 1ws8A 109 7.59e+00 b.6.1.1 114843 2gujA 155 8.42e+00 1aunA 208 8.66e+00 b.25.1.1 23900 1r8nA 185 8.87e+00 b.42.4.1 104851 1xnaA 183 9.27e+00 1xnaA b.18.1.8 23773 1r8oA 96 9.71e+00 b.42.4.1 104852 1a4kA 217 1.05e+01 8fabA b.1.1.1 20236 b.1.1.2 21248 1nqbA 256 1.07e+01 1mfa b.1.1.1 20043 b.1.1.1 20042 1jbjA 186 1.10e+01 b.1.1.4 66482 b.1.1.4 66483 1tetL 216 1.13e+01 32c2A b.1.1.1 19902 b.1.1.2 20996 1wqkA 42 1.16e+01 3co8A 380 1.20e+01 2adgA 214 1.21e+01 3c5xA 402 1.23e+01 2cmzA 423 1.46e+01 1klo 162 1.54e+01 1klo 1kloA 162 1.54e+01 g.3.11.2 44326 g.3.11.2 44327 g.3.11.2 44328 2h7zB 77 1.65e+01 g.7.1.1 136232 3c5xC 130 1.67e+01 1otgA 125 1.77e+01 1otgA d.80.1.2 39831 3b46A 447 1.79e+01 1gc5A 467 1.94e+01 1gc5A c.72.1.3 60429 1ebpA 211 1.94e+01 1eerB b.1.2.1 22023 b.1.2.1 22024 3bdrA 190 2.02e+01 1roaA 122 2.08e+01 d.17.1.2 105024 1npmA 225 2.11e+01 5ptp b.47.1.2 26070 1xt5A 135 2.23e+01 3cla 213 2.23e+01 3cla 3claA 213 2.23e+01 c.43.1.1 32610 1g96A 120 2.23e+01 1g96A d.17.1.2 60393 3cewA 125 2.24e+01 2g8sA 353 2.24e+01 3bs2A 148 2.24e+01 2e8yA 718 2.25e+01 7odcA 424 2.25e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1ebaA 215 2.29e+01 1eerB b.1.2.1 22015 b.1.2.1 22016 1sluA 142 2.31e+01 1sluA b.16.1.1 23685 2b1mA 246 2.37e+01 1dlfL 113 2.38e+01 8fabA b.1.1.1 20382 1zhvA 134 2.42e+01 d.58.18.8 125109 d.58.18.8 125110 1gy8A 397 2.45e+01 c.2.1.2 83376 1v2bA 177 2.46e+01 d.107.1.2 108279 1ospL 214 2.50e+01 32c2A b.1.1.1 20116 b.1.1.2 21146 1krnA 88 2.51e+01 g.14.1.1 44629 2cy5A 140 2.56e+01 b.55.1.2 131018 2oitA 434 2.56e+01 3cdxA 354 2.60e+01 1avwB 171 2.63e+01 1wba b.42.4.1 25599 1kb5A 115 2.68e+01 1tvdA b.1.1.1 20611 1eut 605 2.78e+01 1eut 1d5rA 324 2.81e+01 1d5rA b.7.1.1 23181 c.45.1.1 32697 2bszA 278 2.85e+01 d.3.1.5 129131 2o6xA 310 2.88e+01 2qjvA 270 2.88e+01 1tiqA 180 2.89e+01 d.108.1.1 107010 1v30A 124 2.91e+01 d.269.1.1 113496 1ad9A 219 3.05e+01 8fabA b.1.1.1 20214 b.1.1.2 21226 1yymG 313 3.06e+01 d.172.1.1 124232 2a9kB 223 3.11e+01 d.166.1.1 126443 1xniA 118 3.16e+01 b.34.9.1 115582 b.34.9.1 115583 2fc7A 82 3.21e+01 1iooA 196 3.28e+01 d.124.1.1 71250 1cby 259 3.29e+01 1cby 1cbyA 259 3.29e+01 d.103.1.1 40705 2cu9A 161 3.46e+01 2yz1A 120 3.66e+01 1cruA 454 3.75e+01 1c9uA b.68.2.1 27617 1vhtA 218 3.78e+01 c.37.1.1 100700 2aabL 218 3.80e+01 1jffB 445 3.85e+01 c.32.1.1 62934 d.79.2.1 62935