Best Alignments for T0389

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1qb0A/T0389-1qb0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qb0A/T0389-1qb0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.7607e-161.93e-58 1c25 c.46.1.1
2a2kA/T0389-2a2kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a2kA/T0389-2a2kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6062e-151.53e-55
2oucA/T0389-2oucA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2oucA/T0389-2oucA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.3502e-154.63e-56
2hhgA/T0389-2hhgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hhgA/T0389-2hhgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8377e-115.54e-58
2j6pA/T0389-2j6pA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2j6pA/T0389-2j6pA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.2038e-113.79e-51
2ifdA/T0389-2ifdA-t2k-global-adpstyle1.a2m 2ifdA/T0389-2ifdA-t2k-global-adpstyle1.al 2.4480e-103.18e-34
2eg4A/T0389-2eg4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2eg4A/T0389-2eg4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6452e-102.75e-44
2ifvA/T0389-2ifvA-t2k-global-adpstyle1.a2m 2ifvA/T0389-2ifvA-t2k-global-adpstyle1.al 3.7696e-109.55e-34
2fsxA/T0389-2fsxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fsxA/T0389-2fsxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8292e-074.33e-35
1wv9A/T0389-1wv9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wv9A/T0389-1wv9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6472e-053.02e-29

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001