# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2oucA 133 5.856e-20 1hzmA 155 2.658e-17 c.46.1.1 65975 1ymkA 172 1.138e-13 c.46.1.1 123699 1whbA 158 5.334e-12 c.46.1.4 114639 2a2kA 172 5.479e-12 1qb0A 178 2.141e-11 1c25 c.46.1.1 32699 2gwfA 137 2.915e-09 c.46.1.4 135802 1c25 162 3.406e-09 1c25 1t3kA 133 1.410e-08 c.46.1.1 106357 1gmxA 109 1.460e-06 c.46.1.3 65355 2eg4A 231 1.694e-06 2j6pA 146 2.776e-06 1yt8A 526 2.605e-05 c.46.1.2 123996 c.46.1.2 123997 c.46.1.2 123998 c.46.1.2 123999 1rhsA 294 3.363e-05 c.46.1.2 32703 c.46.1.2 32704 2fsxA 133 4.024e-05 1e0cA 272 1.326e-04 1e0cA c.46.1.2 32717 c.46.1.2 32718 2hhgA 133 3.135e-04 1wv9A 88 3.260e-04 1rhs 294 4.708e-04 1rhs 1uarA 277 1.066e-03 c.46.1.2 107762 c.46.1.2 107763 1okgA 363 4.581e-03 c.46.1.2 93250 c.46.1.2 93251 d.26.1.3 93252 1g2yA 32 5.160e-02 a.34.2.1 17003 1oj8A 106 2.669e-01 d.5.1.1 103975 1jb0J 42 1.648e+00 1jb0J f.23.18.1 62827 1k59A 124 2.664e+00 d.5.1.1 72073 2bryA 480 2.789e+00 1xwjB 25 3.498e+00 2atfA 187 5.883e+00 b.82.1.19 127290 1b1iA 124 6.314e+00 7rsa d.5.1.1 37295 1ufmA 85 6.875e+00 a.4.5.47 107816 1b1eA 124 9.623e+00 7rsa d.5.1.1 37300 1uoyA 65 9.666e+00 g.3.19.1 99709 2d56A 54 1.039e+01 1gqnA 253 1.074e+01 c.1.10.1 90514 1b1jA 124 1.083e+01 7rsa d.5.1.1 37298 1ut3A 39 1.094e+01 g.9.1.1 99899 1gv4A 491 1.141e+01 c.3.1.5 70589 c.3.1.5 70590 d.87.1.1 70591 1mo9A 523 1.241e+01 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1e0fI 58 1.366e+01 1e0fI g.3.15.2 44377 1mai 120 1.383e+01 1mai 1zmdA 473 1.459e+01 1gteA 1006 1.522e+01 a.1.2.2 70440 c.1.4.1 70441 c.3.1.1 70442 c.4.1.1 70443 d.58.1.5 70444 1sfjA 228 1.689e+01 c.1.10.1 112075 1sflA 231 1.721e+01 c.1.10.1 112077 1aogA 486 1.735e+01 3grs c.3.1.5 30517 c.3.1.5 30518 d.87.1.1 40190 2ov2I 35 1.956e+01 1z9tA 241 2.068e+01 1yv4A 105 2.197e+01 1cj3A 393 2.230e+01 1pbe c.3.1.2 30347 d.16.1.2 37878 2v6oA 587 2.361e+01 1fecA 486 2.492e+01 3grs c.3.1.5 30489 c.3.1.5 30490 d.87.1.1 40176 1qfeA 253 2.579e+01 1qfeA c.1.10.1 29167 1qqyA 131 2.786e+01 3lzt d.2.1.2 36586 2j4hA 175 2.913e+01 2apqA 123 2.985e+01 1dy5A 125 3.004e+01 7rsa d.5.1.1 37163 1q9iA 569 3.093e+01 a.138.1.3 96273 c.3.1.4 96274 d.168.1.1 96275 1dzaA 122 3.184e+01 7rsa d.5.1.1 37275 3grs 462 3.195e+01 3grs 2q9kA 148 3.247e+01 1yf3A 260 3.321e+01 c.66.1.28 123046 2oizD 111 3.592e+01 1s3iA 308 3.613e+01 b.46.1.1 98435 c.65.1.1 98436 2e8vA 293 3.622e+01 2q0oC 87 3.623e+01 3bi1A 695 3.783e+01 2k0mA 105 3.807e+01 1ykjA 395 3.886e+01 1wxcA 274 3.923e+01