# List of top-scoring protein chains for T0389.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	5.36e-09	c.46.1.1	65975
2oucA	142	1.07e-07		
1c25A	161	3.35e-07	c.46.1.1	32698
1ymkA	175	4.52e-07	c.46.1.1	123699
1cwtA	178	4.54e-07	c.46.1.1	32702
1qb0A	211	4.65e-07	c.46.1.1	32699
2ifdA	175	4.87e-07		
2ifvA	175	5.17e-07		
2a2kA	175	9.56e-07		
1e0cA	271	9.07e-05	c.46.1.2,c.46.1.2	32717,32718
1uarA	285	0.000196	c.46.1.2,c.46.1.2	107762,107763
1urhA	280	0.000248	c.46.1.2,c.46.1.2	99829,99830
1gmxA	108	0.000577	c.46.1.3	65355
1yt8A	539	0.000714	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1tq1A	129	0.000933	c.46.1.3	107198
1rhdA	293	0.002147	c.46.1.2,c.46.1.2	32715,32716
1rhsA	296	0.002501	c.46.1.2,c.46.1.2	32703,32704
1dp2A	293	0.002506	c.46.1.2,c.46.1.2	32705,32706
2eg4A	230	0.002805		
1whbA	157	0.007605	c.46.1.4	114639
2gwfA	157	0.01149	c.46.1.4	135802
1t3kA	152	0.01197	c.46.1.1	106357
2hhgA	139	0.01273		
1qxnA	137	0.04339	c.46.1.3	96537
2k0zA	110	0.05718		
2j6pA	152	0.08349		
1okgA	373	0.1294	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1wv9A	94	0.9420		
2fsxA	148	1.632		
1veeA	134	9.528		
1ns5A	155	27.69	c.116.1.3	80705
2yvtA	260	36.29		
1xl3C	92	43.59	a.243.1.1	122104
1m1nB	522	51.71	c.92.2.3	78418
1g20B	523	51.72	c.92.2.3	35614
2cyeA	133	61.46	d.38.1.1	131021
3pcgA	200	74.45	b.3.6.1	22647
1agqA	135	75.73	g.17.1.2	44789
1qqhA	144	79.38	b.91.1.1	28404
2bn8A	87	88.85