# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	4.65e-14	c.46.1.1	65975
2oucA	142	5.10e-14		
2a2kA	175	6.27e-14		
1ymkA	175	5.87e-13	c.46.1.1	123699
1qb0A	211	6.17e-13	c.46.1.1	32699
1c25	161	6.52e-13		
1t3kA	152	6.03e-12	c.46.1.1	106357
1gmxA	108	4.81e-11	c.46.1.3	65355
1yt8A	539	8.42e-11	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2hhgA	139	9.91e-11		
2j6pA	152	1.83e-10		
1e0cA	271	2.47e-10	c.46.1.2,c.46.1.2	32717,32718
2fsxA	148	4.51e-10		
2gwfA	157	1.87e-09	c.46.1.4	135802
1rhsA	296	3.39e-09	c.46.1.2,c.46.1.2	32703,32704
2eg4A	230	7.08e-09		
1rhs	296	8.79e-09		
1uarA	285	1.08e-08	c.46.1.2,c.46.1.2	107762,107763
1whbA	157	6.84e-08	c.46.1.4	114639
1wv9A	94	2.73e-07		
1okgA	373	7.14e-07	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2fcaA	213	8.753	c.66.1.53	133262
1y2qA	143	13.90		
1xel	338	16.54		
1rxwA	336	18.33	a.60.7.1,c.120.1.2	98059,98060
3b55A	451	19.50		
1udcA	338	20.36	c.2.1.2	29785
2pidA	356	24.37		
1l6oA	95	26.33	b.36.1.1	84534
2yv1A	294	26.62		
2rdmA	132	27.18		
1gxmA	332	28.82	a.102.5.1	76371
1g8fA	511	29.01	b.122.1.3,c.26.1.5,c.37.1.15	60348,60349,60350
1d5rA	324	29.25	b.7.1.1,c.45.1.1	23181,32697
2f71A	298	29.75	c.45.1.2	133070
2ooqA	286	30.56		
1x24A	180	30.64		
1jsxA	207	31.86	c.66.1.20	71846
2qgmA	445	32.64		
1rxdA	159	35.08	c.45.1.1	111959
1g7fA	298	35.27	c.45.1.2	60330
1g5rA	196	36.56	c.37.1.11	32367
1jztA	246	37.46	c.104.1.1	63319
1ptvA	321	38.68	c.45.1.2	32665
1zckA	154	38.82		
2nw0A	189	39.07		
1pydA	556	40.34	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1rpmA	278	41.66	c.45.1.2	32679
2ggsA	273	42.66		
1vjgA	218	43.90	c.23.10.6	100810
3brsA	289	44.45		
2i75A	320	45.55		
2hl0A	143	47.48		
2bijA	305	50.93		
2f9iB	285	51.67		
2pa5A	314	52.11		
2z1dA	372	52.99		
2qvcA	313	55.77		
2b4pA	334	56.24		
1pa1A	310	58.57	c.45.1.2	94404
1c3pA	375	59.08	c.42.1.2	32606
1ywfA	296	59.30	c.45.1.5	124144
1nni1	174	60.18		
2h4vA	320	60.33		
1lokA	291	61.16	c.56.5.4	78122
1rtqA	299	61.79	c.56.5.4	97819
2pbnA	313	63.36		
3c6qA	311	65.00		
2cw6A	298	66.75		
2oemA	413	67.12		
1a76	326	71.13		
1vkrA	125	72.37	c.44.2.1	108689
1qj5A	429	72.54	c.67.1.4	34493
1vhrA	184	74.64	c.45.1.1	32651
1wq3A	322	76.02		
2i6jA	161	76.03		
1p15A	253	76.14	c.45.1.2	93894
2bvwA	362	76.78	c.6.1.1	30666
1lw3A	657	76.91	b.55.1.8,c.45.1.3	91152,91153
1xjo	284	79.61		
2qtwA	124	80.38		
1tib	269	80.94		
1oc7A	364	81.77	c.6.1.1	86794
1qycA	308	82.31	c.2.1.2	96581
1rkuA	206	82.80	c.108.1.11	97627
1bvwA	360	82.95	c.6.1.1	30668
1wrmA	165	87.41		
2oixA	186	87.86