# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	7.25e-14	c.46.1.1	65975
2oucA	142	1.81e-13		
2a2kA	175	1.81e-13		
1ymkA	175	1.47e-12	c.46.1.1	123699
1c25	161	1.57e-12		
1qb0A	211	1.76e-12	c.46.1.1	32699
1t3kA	152	1.60e-11	c.46.1.1	106357
1gmxA	108	1.10e-10	c.46.1.3	65355
1yt8A	539	1.56e-10	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2hhgA	139	2.45e-10		
2j6pA	152	3.91e-10		
1e0cA	271	5.99e-10	c.46.1.2,c.46.1.2	32717,32718
2fsxA	148	9.23e-10		
2gwfA	157	3.09e-09	c.46.1.4	135802
1uarA	285	7.03e-09	c.46.1.2,c.46.1.2	107762,107763
1rhsA	296	7.63e-09	c.46.1.2,c.46.1.2	32703,32704
2eg4A	230	1.14e-08		
1rhs	296	2.77e-08		
1whbA	157	8.07e-08	c.46.1.4	114639
1wv9A	94	6.64e-07		
1okgA	373	1.90e-06	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2fcaA	213	13.11	c.66.1.53	133262
1rxwA	336	16.24	a.60.7.1,c.120.1.2	98059,98060
2pidA	356	16.47		
1y2qA	143	17.54		
2yv1A	294	21.15		
1d5rA	324	23.15	b.7.1.1,c.45.1.1	23181,32697
1pydA	556	23.19	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
3b55A	451	23.75		
2f71A	298	23.83	c.45.1.2	133070
1gxmA	332	24.82	a.102.5.1	76371
1ptvA	321	26.49	c.45.1.2	32665
2rdmA	132	27.08		
2ooqA	286	27.83		
1g7fA	298	30.41	c.45.1.2	60330
1x24A	180	32.89		
1xel	338	34.58		
2h4vA	320	35.17		
1xjo	284	35.54		
1vkrA	125	36.16	c.44.2.1	108689
1rtqA	299	37.61	c.56.5.4	97819
1rpmA	278	40.39	c.45.1.2	32679
1g8fA	511	40.81	b.122.1.3,c.26.1.5,c.37.1.15	60348,60349,60350
1lokA	291	41.07	c.56.5.4	78122
2pa5A	314	41.19		
1qj5A	429	41.72	c.67.1.4	34493
1rxdA	159	42.51	c.45.1.1	111959
1zckA	154	43.84		
1jsxA	207	45.18	c.66.1.20	71846
2bijA	305	45.96		
2pbnA	313	47.19		
1l6oA	95	47.90	b.36.1.1	84534
2i75A	320	50.87		
1udcA	338	50.91	c.2.1.2	29785
1vhhA	162	54.43	d.65.1.2	39550
1jztA	246	54.93	c.104.1.1	63319
1pa1A	310	56.14	c.45.1.2	94404
2hl0A	143	57.64		
2p6xA	309	59.77		
1ytw	306	60.80		
2qgmA	445	61.33		
2ggsA	273	62.81		
1g5rA	196	63.94	c.37.1.11	32367
1o7dA	298	66.75	c.6.2.1	86641
1vhh	162	68.09		
1ru8A	232	68.52	c.26.2.1	97849
2f9iB	285	68.81		
1yfoA	302	69.34	c.45.1.2	32681
1wq3A	322	70.01		
1nni1	174	71.01		
2b4pA	334	72.05		
2oemA	413	72.38		
1g4uS	383	73.01	a.24.11.1,c.45.1.2	16643,32691
1qycA	308	73.34	c.2.1.2	96581
1rkuA	206	75.57	c.108.1.11	97627
1c3pA	375	75.62	c.42.1.2	32606
2qtwA	124	75.77		
3bv0A	437	76.24		
2fh7A	595	78.01		
1eeoA	321	79.33	c.45.1.2	32655
1tib	269	80.38		
1ywfA	296	82.59	c.45.1.5	124144
1a76	326	83.28		
1lw3A	657	83.34	b.55.1.8,c.45.1.3	91152,91153
2gasA	307	83.41		
1s0aA	429	86.87	c.67.1.4	98263
1bvyF	191	87.84	c.23.5.1	31207
1jlnA	297	88.47	c.45.1.2	63172