# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oucA 142 3.46e-14 1hzmA 154 1.29e-13 c.46.1.1 65975 2a2kA 175 1.53e-13 1c25 161 1.17e-12 1ymkA 175 1.23e-12 c.46.1.1 123699 1qb0A 211 1.47e-12 c.46.1.1 32699 1t3kA 152 1.81e-11 c.46.1.1 106357 1gmxA 108 2.80e-11 c.46.1.3 65355 1yt8A 539 3.68e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2hhgA 139 9.22e-11 1e0cA 271 1.90e-10 c.46.1.2,c.46.1.2 32717,32718 2j6pA 152 2.13e-10 2fsxA 148 1.04e-09 1rhsA 296 1.37e-09 c.46.1.2,c.46.1.2 32703,32704 2gwfA 157 1.89e-09 c.46.1.4 135802 1uarA 285 2.81e-09 c.46.1.2,c.46.1.2 107762,107763 2eg4A 230 3.98e-09 1rhs 296 5.27e-09 1whbA 157 4.61e-08 c.46.1.4 114639 1wv9A 94 1.93e-07 1okgA 373 2.93e-07 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2fcaA 213 4.701 c.66.1.53 133262 1pydA 556 11.18 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1xel 338 17.63 1y2qA 143 17.82 1gxmA 332 18.21 a.102.5.1 76371 1rxwA 336 19.08 a.60.7.1,c.120.1.2 98059,98060 1ns5A 155 20.28 c.116.1.3 80705 2ooqA 286 23.67 2pidA 356 24.56 2cw6A 298 27.89 1rpmA 278 29.37 c.45.1.2 32679 1vkrA 125 31.39 c.44.2.1 108689 1g7fA 298 32.13 c.45.1.2 60330 2gasA 307 33.38 1g5rA 196 34.87 c.37.1.11 32367 1qj5A 429 36.00 c.67.1.4 34493 2rdmA 132 37.54 2yv1A 294 37.85 1udcA 338 37.93 c.2.1.2 29785 2f71A 298 38.07 c.45.1.2 133070 2fh7A 595 40.84 2hl0A 143 42.05 1a76 326 46.21 2pbnA 313 46.61 2qtwA 124 49.06 1g8fA 511 49.08 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2bijA 305 49.48 1zckA 154 49.63 1d5rA 324 49.72 b.7.1.1,c.45.1.1 23181,32697 1jsxA 207 53.26 c.66.1.20 71846 2gt1A 326 53.37 1rpnA 335 53.62 c.2.1.2 97708 1eziA 228 53.63 c.68.1.13 34512 1ptvA 321 53.69 c.45.1.2 32665 2oemA 413 54.61 2bkwA 385 54.83 c.67.1.3 128714 2b49A 287 54.97 1qycA 308 55.20 c.2.1.2 96581 2fprA 176 56.88 c.108.1.19 133919 1jztA 246 57.40 c.104.1.1 63319 2pa5A 314 57.70 2elcA 329 59.27 3bv0A 437 59.66 1rxdA 159 60.83 c.45.1.1 111959 1vh0A 161 61.60 c.116.1.3 100626 3b55A 451 61.74 1ztpA 251 62.81 d.86.1.2 125649 2h4vA 320 67.93 1p15A 253 68.38 c.45.1.2 93894 1pa1A 310 70.38 c.45.1.2 94404 1lokA 291 73.54 c.56.5.4 78122 1npyA 271 74.41 c.2.1.7,c.58.1.5 85995,85996 1larA 575 74.59 c.45.1.2,c.45.1.2 32693,32694 1yfoA 302 74.90 c.45.1.2 32681 1vjgA 218 76.72 c.23.10.6 100810 1eeoA 321 77.36 c.45.1.2 32655 1jlnA 297 77.73 c.45.1.2 63172 1fcjA 322 77.77 c.79.1.1 35289 2bvwA 362 78.66 c.6.1.1 30666 1qjwA 365 79.10 c.6.1.1 30657 1zz1A 369 80.68 1bvwA 360 81.07 c.6.1.1 30668 1wq3A 322 83.25 2b4pA 334 84.00 1kewA 361 84.69 c.2.1.2 68544 1ywfA 296 85.48 c.45.1.5 124144 2nw0A 189 87.03 1x24A 180 87.16 1rtqA 299 87.94 c.56.5.4 97819 3brsA 289 89.21 1l6oA 95 89.89 b.36.1.1 84534